Return to main results Retrieve Phyre Job Id

Job DescriptionP39285
Confidence84.82%DateThu Jan 5 11:58:57 GMT 2012
Rank46Aligned Residues38
% Identity24%Templatec2zkrt_
PDB info PDB header:ribosomal protein/rnaChain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
Resolution8.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   933......940.. . ... ...950.........960. ........970
Predicted Secondary structure 





..
...
.
.......



Query SS confidence 









. .
. . .


.














. . . . . . .








Query Sequence  PIRIGDTVTI. . R. . . DLT. GSVTKINTRATTISD. . . . . . . WDRKEIIVP
Query Conservation 
   

 
  .. ...   .
 
  
  
 
 
  ....... 
     

Alig confidence 









..
...


.














.......








Template Conservation 





 
 
 

  

 
 


  
      
 




  
  
  
  
Template Sequence  PIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVG
Template Known Secondary structure  B

TT

SSTTTT

STTTTTT

SS



Template Predicted Secondary structure 




















Template SS confidence 


















































   48.50.........60.........70.........80.........90........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions