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Job Description | P39285 | Confidence | 52.87% | Date | Thu Jan 5 11:58:57 GMT 2012 |
Rank | 106 | Aligned Residues | 86 |
% Identity | 12% | Template | c2v4hA_ |
PDB info |
PDB header:transcription | Chain: A: PDB Molecule:nf-kappa-b essential modulator; |
PDBTitle: nemo cc2-lz domain - 1d5 darpin complex
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Resolution | 2.9 Å |
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65 | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
R | I | K | Q | Y | Q | Q | V | I | D | N | Y | P | K | L | S | A | T | L | R | A | Q | L | N | N | M | R | D | E | P | R | S | V | S | P | G | M | S | T | D | A | L | N | Q | E | I | L | Q | V | S | S | Q | L | L | D | K | S | R | Q | A | Q | Q | E | Q | E | R | A | R | E | I | A | D | S | L | N | Q | L | P | Q | Q |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
Q | L | E | D | L | R | Q | Q | L | Q | Q | A | E | E | A | L | V | A | K | Q | E | L | I | D | K | L | K | E | E | A | E | Q | H | K | I | V | M | . |
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E | T | V | P | V | L | K | A | Q | A | D | I | Y | K | A | D | F | Q | A | E | R | H | A | R | E | K | L | V | E | K | K | E | Y | L | Q | E | Q |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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252 | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | |
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. | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . |
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145 | . | . | . | . | 150 | . | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
Q | T | D | A | R | R | Q | L | N | E | I | E |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
L | E | Q | L | Q | R | E | F | N | K | L | K |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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326 | . | . | . | 330 | . | . | . | . | . | . | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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