Job Description P39285 Confidence 39.30% Date Thu Jan 5 11:58:57 GMT 2012 Rank 170 Aligned Residues 297 % Identity 9% Template c1u4qB_ PDB info PDB header:structural protein Chain: B: PDB Molecule:spectrin alpha chain, brain; PDBTitle: crystal structure of repeats 15, 16 and 17 of chicken brain2 alpha spectrin Resolution 2.50 Å

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		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.										.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.
Query Sequence		R	E	I	A	D	S	L	N	Q	L	P	Q	Q	Q	T	D	A	R	R	Q	L	.	.	.	.	.	.	.	.	.	N	E	I	E	R	R	L	G	T	L	T	G	N	T	P	L	N	Q	A	Q	N	F	A	L	Q	S	D	S	A	R	L	K	A	L	V	D	E	L	E	L	A	Q	L	S	A	N	N	R	Q	E
Query Conservation																							.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	N	F	N	T	G	I	K	D	F	D	F	W	L	S	E	V	E	A	L	L	A	S	E	D	Y	G	K	D	L	A	S	V	N	N	L	L	K	K	H	Q	L	L	E	A	D	I	S	A	H	E	D	R	L	K	D	L	N	S	Q	A	D	S	L	M	T	S	S	A	F	D	T	S	Q	V	K	D	K	R	E
Template Known Secondary structure																						T	T						S	S																																					T	S	S		S
Template Predicted Secondary structure
Template SS confidence
		1666	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.	.	.	.	.	.	1690	.	.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.	1740	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	R	L	R	S	E	L	A	E	K	E	S	Q	Q	L	D	A	Y	L	Q	A	L	R	N	Q	L	N	S	Q	R	Q	L	E	A	E	R	A	L	E	S	T	E	L	L	A	E	N	S	A	D	L	P	K	D	I	V	A	Q	F	K	I	N	R	E	L	S	A	A	L	N	Q	Q	A	Q	R	M	D	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	I	N	G	R	F	Q	R	I	K	S	M	A	A	A	R	R	A	K	L	N	E	S	H	R	L	H	Q	F	F	R	D	M	D	D	E	E	S	W	I	K	E	K	K	L	L	V	S	S	E	D	Y	G	R	D	L	T	G	V	Q	N	L	R	K	K	H	K	R	L	E	A	E	L	A	A	H	E	P	A	I
Template Known Secondary structure																																																T	T						S	S
Template Predicted Secondary structure
Template SS confidence
		1746	.	.	.	1750	.	.	.	.	.	.	.	.	.	1760	.	.	.	.	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.	.	.	.	.	1820	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		A	S	Q	Q	R	Q	A	A	S	Q	T	L	Q	V	R	Q	A	L	N	T	L	R	E	Q	S	Q	W	L	G	S	S	N	L	L	G	E	A	L	R	A	Q	V	A	R	L	P	E	M	P	K	P	Q	Q	L	D	T	E	M	A	Q	L	R	V	Q	R	L	R	Y	E	D	L	L	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence																																																																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	G	V	L	D	T	G	K	K	L	S	D	D	N	T	I	G	K	E	E	I	Q	Q	R	L	A	Q	F	V	D	H	W	K	E	L	K	Q	L	A	A	A	R	G	Q	R	L	E	E	S	L	E	Y	Q	Q	F	V	A	N	V	E	E	E	E	A	W	I	N	E	K	M	T	L	V	A	S	E	D	Y	G	D
Template Known Secondary structure													T	T			S																																																									T	S						S
Template Predicted Secondary structure
Template SS confidence
		1826	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.	.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.	.	.	1890	.	.	.	.	.	.	.	.	.	1900	.	.	.	.	.
			355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	N	K	Q	P	L	L	R	Q	I	H	Q	A	D	G	Q	P	L	T	A	E	Q	N	R	I	L	E	A	Q	L	R	T	Q	R	E	L	L	N	S	L	L	Q	G	G	D	T	L	L	L	E	L	T	K	L	K	V	S	N	G	Q	L	E	D	A	L	K	E	V	N	E	A	T	H	R	Y
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		T	L	A	A	I	Q	G	L	L	K	K	H	E	A	F	E	T	D	F	T	V	H	K	D	R	V	N	D	V	C	A	N	G	E	D	L	I	K	K	N	N	H	H	V	E	N	I	T	A	K	M	K	G	L	K	G	K	V	S	D	L	E	K	A	A	A	Q	R	K	A	K	L	D	E	N
Template Known Secondary structure		S																																						T	T		S	T					T																											T
Template Predicted Secondary structure
Template SS confidence
		1906	.	.	.	1910	.	.	.	.	.	.	.	.	.	1920	.	.	.	.	.	.	.	.	.	1930	.	.	.	.	.	.	.	.	.	1940	.	.	.	.	.	.	.	.	.	1950	.	.	.	.	.	.	.	.	.	1960	.	.	.	.	.	.	.	.	.	1970	.	.	.	.	.	.	.	.	.	1980

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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