Job Description P39285 Confidence 60.56% Date Thu Jan 5 11:58:57 GMT 2012 Rank 82 Aligned Residues 75 % Identity 19% Template c1l2fA_ PDB info PDB header:transcription Chain: A: PDB Molecule:n utilization substance protein a; PDBTitle: crystal structure of nusa from thermotoga maritima: a2 structure-based role of the n-terminal domain Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		935	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.									.	.	.	.	1000	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.
Query Sequence		R	I	G	D	T	V	T	I	R	D	L	T	G	S	V	T	K	I	N	T	R	A	T	T	I	S	D	W	D	R	K	E	I	I	V	P	N	K	A	F	I	T	E	Q	F	I	N	W	S	L	S	D	S	V	T	R	V	V	L	T	I	.	.	.	.	.	.	.	.	P	A	P	A	D	A	N	S	E	E	V
Query Conservation																																																															.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.														.																			.	.																.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.														.																			.	.
Template Sequence		L	K	G	T	V	T	T	.	.	.	.	.	A	E	V	I	R	V	X	G	E	W	A	D	I	.	R	I	G	K	L	E	T	R	L	P	K	K	E	W	I	P	G	E	.	.	E	I	K	A	G	D	L	V	K	V	Y	I	I	D	V	V	K	T	T	K	G	P	K	I	L	V	S	R	R	V	P	E	F	V
Template Known Secondary structure		T	T	T	S				.	.	.	.	.								S	S					.			T	T							G	G	G	S		T	T		.	.				T	T														T	T								S	S	S
Template Predicted Secondary structure									.	.	.	.	.														.																			.	.
Template SS confidence
		133	.	.	.	.	.	.						140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		1007	.	.	1010	.	.	.	.	.	.	.	.	.	1020
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	I	L	L	T	A	A	R	R	C	S	L	V
Query Conservation
Alig confidence								.	.	.
Template Conservation								.	.	.
Template Sequence		I	G	L	X	K	L	.	.	.	E	I	P	E	V
Template Known Secondary structure								.	.	.
Template Predicted Secondary structure								.	.	.
Template SS confidence
		205	.	.	.	.	210				.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions