Job Description P76417 Confidence 100.00% Date Thu Jan 5 12:22:51 GMT 2012 Rank 1 Aligned Residues 403 % Identity 12% Template d1pv7a_ SCOP info MFS general substrate transporter MFS general substrate transporter LacY-like proton/sugar symporter Resolution 3.60

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		K	T	T	A	K	L	S	F	M	M	F	V	E	W	F	I	W	G	A	W	F	V	P	L	W	L	W	L	S	K	.	S	G	F	S	A	G	E	I	G	W	S	Y	A	C	T	A	I	A	A	I	L	S	P	I	L	V	G	S	I	T	D	R	F	F	S	A	Q	K	V	L	A	V	L	M	F	A	G	A	L
Query Conservation																																.
Alig confidence																																.																																						.
Template Conservation																																																																						.
Template Sequence		T	N	F	W	M	F	G	L	F	F	F	F	Y	F	F	I	M	G	A	Y	F	P	F	F	P	I	W	L	H	D	I	N	H	I	S	K	S	D	T	G	I	I	F	A	A	I	S	L	F	S	L	L	F	Q	P	L	F	G	L	L	S	D	K	L	G	L	R	K	.	Y	L	L	W	I	I	T	G	M	L	V
Template Known Secondary structure																																																						T												T	T		T	.
Template Predicted Secondary structure																																																																						.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.								130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.
Query Sequence		L	M	Y	F	A	A	Q	Q	T	T	F	A	G	F	F	P	L	L	L	A	Y	S	L	T	Y	M	P	T	I	A	L	T	N	S	I	A	F	A	N	V	P	D	V	E	R	D	F	P	R	.	.	.	.	.	.	.	I	R	V	M	G	T	I	G	W	I	A	S	G	L	A	C	G	F	L	P	Q	I	L	G
Query Conservation																																																			.	.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	F	A	P	F	F	I	F	I	F	G	P	L	L	Q	Y	N	I	L	V	G	S	I	V	G	G	I	Y	L	G	F	C	F	N	A	G	A	P	A	V	E	A	F	I	E	K	V	S	R	R	S	N	F	E	F	G	R	A	R	M	F	G	C	V	G	W	A	L	G	A	S	I	V	G	I	M	F	T	I	N
Template Known Secondary structure		T								T							T	T								T	T	T	T	G	G	G	G	G	T	T																	S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	D	I	S	P	T	N	I	P	L	L	I	T	A	G	S	S	A	L	L	G	V	F	A	F	F	L	P	D	T	P	P	K	S	T	G	K	M	D	I	K	V	M	L	G	L	D	A	L	I	L	L	R	D	K	N	F	L	V	F	F	F	C	S	F	L	F	A	M	P	L	A	F	Y	Y	I	F	A	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	Q	F	V	F	W	L	G	S	G	C	A	L	I	L	A	V	L	L	F	F	A	K	T	D	A	P	S	S	A	T	V	A	N	A	V	G	A	N	H	S	A	F	S	L	K	L	A	L	E	L	F	R	Q	P	K	L	W	F	L	S	L	Y	V	I	G	V	S	C	T	Y	D	V	F	D	Q	Q	F	A	N
Template Known Secondary structure																						S	S				S		S	S	S		S	S					S														T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	L	T	E	V	G	M	K	N	A	T	G	W	M	T	L	G	Q	F	S	E	I	F	F	M	L	A	L	P	F	F	T	K	R	F	G	I	K	K	V	L	L	L	G	L	V	T	A	A	I	R	Y	G	F	F	I	Y	G	S	A	D	E	Y	F	T	Y	A	L	L	F	L	G	I	L	L	H	G	V	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	F	T	S	F	F	A	T	G	E	Q	G	T	R	V	F	G	Y	V	T	T	M	G	E	L	L	N	A	S	I	M	F	F	A	P	L	I	I	N	R	I	G	G	K	N	A	L	L	L	A	G	T	I	M	S	V	R	I	I	G	S	S	F	A	T	S	A	L	E	V	V	I	L	K	T	L	H	M	F	E
Template Known Secondary structure				T	T	S	S	S																									T	T																														T
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	F	Y	Y	V	T	A	Y	I	Y	V	D	K	K	A	P	V	H	M	R	T	A	A	Q	G	L	I	T	L	C	C	Q	G	F	G	S	L	L	G	Y	R	L	G	G	V	M	M	E	K	M	F	A	Y	Q	E	P	V	N	G	L	T	F	N	W	S	G	M	W	T	F	G	A	V	M	I	A	I	I	A
Query Conservation
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	P	F	L	L	V	G	C	F	K	Y	I	T	S	Q	F	E	V	R	F	S	A	T	I	Y	L	V	C	F	C	F	F	K	Q	L	A	M	I	F	M	S	V	L	A	G	N	M	Y	E	S	I	.	.	.	.	.	.	.	.	.	.	.	.	G	F	Q	G	A	Y	L	V	L	G	L	V	A	L	G	F	T
Template Known Secondary structure																	S		G	G	G										T	T	T																				.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.													.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	F	M	I	F	F	R	E	S	D	N	E	I	T	A	I	K	V	D	D	R	D	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	S	V	F	T	L	S	G	P	G	P	L	S	L	L	R	R	Q	V	N	E	V	A
Template Known Secondary structure								S			S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions