Job Description P76417 Confidence 99.95% Date Thu Jan 5 12:22:51 GMT 2012 Rank 4 Aligned Residues 385 % Identity 11% Template c3o7pA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Resolution 3.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	T	A	K	L	S	F	M	M	F	V	E	W	F	I	W	G	A	W	F	V	P	L	W	L	W	L	S	K	S	G	F	S	A	G	E	I	G	W	S	Y	A	C	T	A	I	A	A	I	L	S	P	I	L	V	G	S	I	T	D	R	F	F	S	A	Q	K	V	L	A	V	L	M	F	A	G	A	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	S	Y	I	I	P	F	A	L	L	C	S	L	F	F	L	W	A	V	A	N	N	L	N	D	I	L	L	P	Q	F	Q	Q	A	F	F	Q	A	G	L	I	Q	S	A	F	Y	F	G	Y	F	I	I	P	I	P	A	G	I	L	M	K	K	L	S	Y	K	A	G	I	I	T	G	L	F	L	Y	A	L	G	A
Template Known Secondary structure			T	T	T																													T	T			T	T													T	T											S
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		82	.	.	.	.	.	.			.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		M	Y	F	A	A	Q	Q	.	.	T	T	F	A	G	F	F	P	L	L	L	A	Y	S	L	T	Y	M	P	T	I	A	L	T	N	S	I	A	F	A	N	V	P	D	V	E	R	D	F	P	R	I	R	V	M	G	T	I	G	W	I	A	S	G	L	A	C	G	F	L	P	Q	I	L	G	Y	A	D	I	S	P
Query Conservation									.	.
Alig confidence									.	.
Template Conservation
Template Sequence		A	L	F	W	P	A	A	E	I	M	N	Y	T	L	F	L	V	G	L	F	I	I	A	A	G	L	G	C	L	E	T	A	A	N	P	F	V	T	V	L	G	P	E	S	S	G	H	F	R	L	N	L	A	Q	T	F	A	S	F	G	A	I	I	A	V	V	F	G	Q	S	L	I	L	S	N	V	P	H	Q	S
Template Known Secondary structure			T							T	T																														S	S		G	G	G																										T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.																								.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	N	I	P	L	L	I	T	A	G	S	S	A	L	L	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	F	F	L	P	D	T	P	P	K	S	T	G	K	M	D	I	K	V	M	L	G	L	D	A	L	I	L	L	R	D	K	N	F	L	V	F	F	F
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	D	V	L	D	K	M	S	P	E	Q	L	S	A	Y	K	H	S	L	V	L	S	V	Q	T	P	Y	M	I	I	V	A	I	V	L	L	V	A	L	L	I	M	L	T	K	F	P	A	L	Q	S	D	N	H	S	D	A	K	Q	G	S	F	S	A	S	L	S	R	L	A	R	I	R	H	W	R	W	A	V	L
Template Known Secondary structure								S																	T	T																			S						T	T	T					S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	S	F	L	F	A	M	P	L	A	F	Y	Y	I	F	A	N	G	Y	L	T	E	V	G	M	K	N	A	T	G	W	M	T	L	G	Q	F	S	E	I	F	F	M	L	A	L	P	F	F	T	K	R	F	G	I	K	K	V	L	L	L	G	L	V	T	A	A	I	R	Y	G	F	F	I	Y	G	S	A	D	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Q	F	C	Y	V	G	A	Q	T	A	C	W	S	Y	L	I	R	Y	A	V	E	E	I	P	G	M	T	A	G	F	A	A	N	Y	L	T	G	T	M	V	C	F	F	I	G	R	F	T	G	T	W	L	I	S	R	F	A	P	H	K	V	L	A	A	Y	A	L	I	A	M	A	L	C	L	I	S	A	F	A
Template Known Secondary structure																									S	T	T																															S																							S
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	F	T	Y	A	L	L	F	L	G	I	L	L	H	G	V	S	Y	D	F	Y	Y	V	T	A	Y	I	Y	V	D	K	K	A	P	V	H	M	R	T	A	A	Q	G	L	I	T	L	C	C	Q	G	F	G	S	L	L	G	Y	R	L	G	G	V	M	M	E	K	M	F	A	Y	Q	E	P	V	N	G	L	T	F
Query Conservation
Alig confidence				.	.																																													.	.	.																						.	.	.	.	.	.	.	.
Template Conservation				.	.																																													.	.	.																						.	.	.	.	.	.	.	.
Template Sequence		G	G	.	.	H	V	G	L	I	A	L	T	L	C	S	A	F	M	S	I	Q	Y	P	T	I	F	S	L	G	I	K	N	L	G	Q	D	T	K	Y	G	S	S	F	I	V	M	T	I	.	.	.	I	G	G	G	I	V	T	P	V	M	G	F	V	S	D	A	A	G	N	I	P	.	.	.	.	.	.	.	.
Template Known Secondary structure				.	.															T	T											S	S		G	G	G											G	G	.	.	.	G																	T	S	S	G	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.																																													.	.	.																						.	.	.	.	.	.	.	.
Template SS confidence
		346	.			.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.				.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	W	S	G	M	W	T	F	G	A	V	M	I	A	I	I	A	V	L	F	M	I	F	F	R	E	S
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	T	A	E	L	I	P	A	L	C	F	A	V	I	F	I	F	A	R	F	R	S	Q	T
Template Known Secondary structure		.	.	.	.	G	G	G															T	S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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