Return to main results Retrieve Phyre Job Id

Job DescriptionP0CG19
Confidence100.00%DateThu Jan 5 11:31:53 GMT 2012
Rank16Aligned Residues202
% Identity23%Templatec3hkmB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:os03g0854200 protein; PDBTitle: crystal structure of rice(oryza sativa) rrp46
Resolution1.98 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
Predicted Secondary structure 












































Query SS confidence 















































































Query Sequence  RPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKG
Query Conservation 
 


   
 
 
 
  
 
  
 


 
  
 
 

  
               
   
                    
Alig confidence 





























































.............




Template Conservation 
 


   
 
 
 
  
 
  
 


 
  
 
 

  
  
                
  .............     
Template Sequence  RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEVVW. . . . . . . . . . . . . KPMTG
Template Known Secondary structure 
TTS

TT






SSSSTTS

TTS
TTS.............
SSS
Template Predicted Secondary structure 





























.............



Template SS confidence 















































































   5....10.........20.........30.........40.........50.........60...... ...70.
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
Predicted Secondary structure 






























Query SS confidence 















































































Query Sequence  KQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAA
Query Conservation          
   
   
   
         
 
 
 

  

    
   
   

     
         
 
   
  
Alig confidence 


























































...........









Template Conservation          
   
   
   
         
 
 
 

  

    
 
 
   

   ...........


      
Template Sequence  QIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFA. . . . . . . . . . . GIPLKHLAVA
Template Known Secondary structure  S

TTB
TTSSSS
SS
...........T

BSS
Template Predicted Secondary structure 















...........








Template SS confidence 















































































   72.......80.........90.........100.........110.........120.........130 .........140
 
   162....... 170.........180.........190.........200.........210.........220........
Predicted Secondary structure 

.




















Query SS confidence 







.


























































Query Sequence  VSVGIVNG. EAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGESNPL
Query Conservation   
      .  
 


  

        
     
 
      
         
   
  
      
Alig confidence 







.


































.






















Template Conservation   
         
 


  

                   
    . 
      
   
  
      
Template Sequence  IGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKRGLITSIT. HGVMSEEDYFSCIERGLAASSRI
Template Known Secondary structure 
SSS
S


S





S.


Template Predicted Secondary structure 












.




Template SS confidence 



































































   141........150.........160.........170.........180.... .....190.........200.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions