Job Description P0CG19 Confidence 100.00% Date Thu Jan 5 11:31:53 GMT 2012 Rank 21 Aligned Residues 190 % Identity 28% Template c3cdjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:polynucleotide phosphorylase; PDBTitle: crystal structure of the e. coli kh/s1 domain truncated2 pnpase Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	P	A	G	R	S	N	N	Q	V	R	P	V	T	L	T	R	N	Y	T	K	H	A	E	G	S	V	L	V	E	F	G	D	T	K	V	L	C	T	A	S	I	E	E	G	V	P	R	F	L	K	G	Q	G	Q	G	W	I	T	A	E	Y	G	M	L	P	R	S	T	H	T	R	N	A	R	E	A	A	K
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template Sequence		P	R	I	D	G	R	E	K	D	M	I	R	G	L	D	V	R	T	G	V	L	P	R	T	H	G	S	A	L	F	T	R	G	E	T	Q	A	L	V	T	A	T	L	G	T	E	R	T	D	T	.	.	.	.	.	.	.	.	F	L	F	H	Y	N	F	P	P	Y	E	I	G	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T	T	T			S	S										S		S	S	S	S	S								T	T																S	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.									.	.	.	390	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	Q	G	G	R	T	M	E	I	Q	R	L	I	A	R	A	L	R	A	A	V	D	L	K	A	L	G	E	F	T	I	T	L	D	C	D	V	L	Q	A	D	G	G	T	R	T	A	S	I	T	G	A	C	V	A	L	V	D	A	L	Q	K	L	V	E	N	G	K	L	K	T	N	P	M	K	G	M	V	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	H	G	R	L	A	K	R	G	V	L	A	V	M	P	D	M	D	K	F	P	Y	T	V	R	V	V	S	E	I	T	E	S	N	G	S	S	S	M	A	S	V	C	G	A	S	L	A	L	M	D	A	.	.	.	.	.	.	.	.	.	.	.	G	V	P	I	K	A	A	V	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	T	T									T	T	S			S	S	S	S															S				S													T	.	.	.	.	.	.	.	.	.	.	.	T				S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
											426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.												.	.	.	480	.	.	.	.	.
		161	.	.	.	.	.	.					.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.
Query SS confidence									.	.	.	.
Query Sequence		A	V	S	V	G	I	V	.	.	.	.	N	G	E	A	V	C	D	L	E	Y	V	E	D	S	A	A	E	T	D	M	N	V	V	M	T	E	D	G	R	I	I	E	V	Q	G	T	A	E	G	E	P	F	T	H	E	E	L	L	I	L	L	A	L	A	R	G	E	S	N	P	L
Query Conservation									.	.	.	.
Alig confidence									.	.	.	.																													.
Template Conservation																																									.
Template Sequence		G	I	A	M	G	L	V	K	E	G	D	N	Y	V	V	L	S	D	I	L	G	D	E	D	H	L	G	D	M	D	F	K	V	A	G	S	R	D	G	.	I	S	A	L	Q	M	D	I	K	I	E	G	I	T	K	E	I	M	Q	V	A	L	N	Q	A	K	G	A	R	L	H	I
Template Known Secondary structure											T	T						S	S			G	G	G	S	S	S	S	S									S	S		.										S	S				S	S
Template Predicted Secondary structure																																									.
Template SS confidence
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.		.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions