Job Description P0CG19 Confidence 100.00% Date Thu Jan 5 11:31:53 GMT 2012 Rank 15 Aligned Residues 212 % Identity 32% Template c2ba1D_ PDB info PDB header:rna binding protein Chain: D: PDB Molecule:archaeal exosome complex exonuclease rrp41; PDBTitle: archaeal exosome core Resolution 2.70 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		M	R	P	A	G	R	S	N	N	Q	V	R	P	V	T	L	T	R	N	Y	T	K	H	A	E	G	S	V	L	V	E	F	G	D	T	K	V	L	C	T	A	S	I	E	E	G	V	.	P	R	F	L	K	G	Q	G	Q	G	W	I	T	A	E	Y	G	M	L	P	R	S	T	H	T	R	N	A	R	E	A	A
Query Conservation																																																	.
Alig confidence																																																	.																													.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		L	R	L	D	G	R	K	F	D	E	L	R	P	I	K	I	E	A	S	V	L	K	R	A	D	G	S	C	Y	L	E	M	G	K	N	K	V	I	A	A	V	F	G	P	R	E	V	H	P	R	H	L	Q	D	P	S	K	A	I	I	R	Y	R	Y	N	M	A	P	F	S	V	E	E	R	K	R	.	.	.	.
Template Known Secondary structure				T	T	S		B	T	T										S			S	S	S	S								T	T														S	S	G	G	G			S	S	S											T	T	S	S	S	S				.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	K	Q	G	G	R	T	M	E	I	Q	R	L	I	A	R	A	L	R	A	A	V	D	L	K	A	L	G	E	F	T	I	T	L	D	C	D	V	L	Q	A	D	G	G	T	R	T	A	S	I	T	G	A	C	V	A	L	V	D	A	L	Q	K	L	V	E	N	G	K	L	K	T	N	P	M	K	G	M	V
Query Conservation
Alig confidence		.																																																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																																																													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	P	G	P	D	R	R	S	I	E	I	S	K	V	S	K	E	A	F	E	A	V	I	M	K	E	L	F	P	R	S	A	I	D	I	F	V	E	V	L	Q	A	D	A	G	S	R	T	A	C	L	N	A	A	S	V	A	L	V	D	A	.	.	.	.	.	.	.	.	.	.	.	G	V	P	M	K	G	M	I
Template Known Secondary structure		.	S	S																		T	T	B		G	G	G	S	T	T														T	T																T	.	.	.	.	.	.	.	.	.	.	.	T			B	S	S
Template Predicted Secondary structure		.																																																													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.												.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		A	A	V	S	V	G	I	V	N	G	E	A	V	C	D	L	E	Y	V	E	D	S	A	A	E	T	D	M	N	V	V	M	T	E	.	D	G	R	I	I	E	V	Q	G	T	A	E	G	E	P	F	T	H	E	E	L	L	I	L	L	A	L	A	R	G	E	S	N	P	L
Query Conservation																																				.
Alig confidence																																				.
Template Conservation
Template Sequence		T	S	V	A	V	G	K	A	D	G	Q	L	V	L	D	P	M	K	E	E	D	N	F	G	E	A	D	M	P	F	A	F	L	I	R	N	G	K	I	E	S	I	A	L	L	Q	M	D	G	R	M	T	R	D	E	V	K	Q	A	I	E	L	A	K	K	G	A	L	Q	I
Template Known Secondary structure										T	T					S									S	S											T	T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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