Job Description P21177 Confidence 97.99% Date Thu Jan 5 11:37:58 GMT 2012 Rank 274 Aligned Residues 127 % Identity 20% Template c7mdhA_ PDB info PDB header:chloroplastic malate dehydrogenase Chain: A: PDB Molecule:protein (malate dehydrogenase); PDBTitle: structural basis for light acitvation of a chloroplast enzyme. the2 structure of sorghum nadp-malate dehydrogenase in its oxidized form Resolution 2.40 Å

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		309	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.								.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure															.																	.	.	.	.	.	.	.
Query SS confidence															.																	.	.	.	.	.	.	.
Query Sequence		D	V	E	T	P	K	Q	A	A	V	L	G	A	.	G	I	M	G	G	G	I	A	Y	Q	S	A	W	K	G	V	.	.	.	.	.	.	.	P	V	V	M	K	D	I	N	D	K	S	L	T	L	G	M	T	E	A	A	K	L	L	N	K	Q	L	E	R	G	K	I	D	G	L	K	L	A	G	V	I	S	T
Query Conservation															.																	.	.	.	.	.	.	.
Alig confidence															.																	.	.	.	.	.	.	.												.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	W	K	K	L	V	N	I	A	V	S	G	A	A	G	M	I	S	N	H	L	L	F	K	L	A	S	G	E	V	F	G	Q	D	Q	P	I	A	L	K	L	L	G	S	E	R	S	F	.	Q	A	L	E	G	V	A	M	E	L	E	D	S	.	.	.	.	.	.	.	.	.	.	.	L	Y	P	L	L	R	E
Template Known Secondary structure													T	T	T	S													T	T	T	T		T	T											G	G	G		.												T	T	.	.	.	.	.	.	.	.	.	.	.	T		T	T
Template Predicted Secondary structure																																																		.														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90												.	.	.	.	.	.	.
		381	.	.	.	.	.	.		.	.	390	.	.	.	.	.	.	.	.	.															400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.							.
Predicted Secondary structure									.													.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.
Query SS confidence									.													.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.
Query Sequence		I	H	P	T	L	D	Y	.	A	G	F	D	R	V	D	I	V	V	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	E	N	P	K	V	K	K	A	V	L	A	E	T	E	Q	K	V	R	Q	D	T	V	L	A	S	N	T	S	T	I	P	I	S	E	L	A	N	.	.	.	.	.	.	A
Query Conservation									.													.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.
Alig confidence									.													.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.								.	.	.	.	.	.
Template Conservation																																																																		.	.
Template Sequence		V	S	I	G	I	D	P	Y	E	V	F	E	D	V	D	W	A	L	L	I	G	A	K	P	R	G	P	G	M	E	R	A	A	L	L	D	I	N	G	Q	I	F	A	D	Q	G	K	A	L	N	A	V	A	S	K	N	V	K	V	L	V	V	G	N	.	.	P	C	N	T	N	A	L	I	C	L	K	N	A	P
Template Known Secondary structure						S						T	T	T		S												T	T																									S		T	T							S	S	.	.	S											T		T
Template Predicted Secondary structure																																																																		.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.
		440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	R	P	E	N	F	C	G	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	P	A	K	N	F	H	A	L
Template Known Secondary structure		T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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