Job Description P21177 Confidence 99.80% Date Thu Jan 5 11:37:58 GMT 2012 Rank 91 Aligned Residues 254 % Identity 13% Template c3pduF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:3-hydroxyisobutyrate dehydrogenase family protein; PDBTitle: crystal structure of gamma-hydroxybutyrate dehydrogenase from2 geobacter sulfurreducens in complex with nadp+ Resolution 1.89 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.		.	.	390	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		K	Q	A	A	V	L	G	A	G	I	M	G	G	G	I	A	Y	Q	S	A	W	K	G	V	P	V	V	M	K	D	I	N	D	K	S	L	T	L	G	M	T	E	A	A	K	L	L	N	K	Q	L	E	R	G	K	I	D	G	L	K	L	A	G	V	I	S	T	I	H	P	T	L	D	Y	.	A	G	F	D	R
Query Conservation																																																																												.
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	T	Y	G	F	L	G	L	G	I	M	G	G	P	M	A	A	N	L	V	R	A	G	F	D	V	T	V	W	N	R	N	P	A	K	C	A	P	L	V	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	R	Q	A	S	S	P	A	E	V	C	A	A
Template Known Secondary structure										S	T	T											T	T								S	S	G	G	G	G							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T					S	S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																									.	.	.	.	.	.	50	.	.	.	.	.	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.			.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.				.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.																											.	.	.
Query SS confidence																					.	.																											.	.	.
Query Sequence		V	D	I	V	V	E	A	V	V	E	N	P	K	V	K	K	A	V	L	.	.	A	E	T	E	Q	K	V	R	Q	D	T	V	L	A	S	N	T	S	T	I	P	I	S	E	L	A	.	.	.	N	A	L	E	R	P	E	N	F	C	G	M	H	F	F	N	P	V	H	R	M	P	L	V	E	I	I	R	G	E
Query Conservation																					.	.																											.	.	.
Alig confidence																					.	.																											.	.	.
Template Conservation
Template Sequence		C	D	I	T	I	A	M	L	A	D	P	A	A	A	R	E	V	C	F	G	A	N	G	V	L	E	G	I	G	G	G	R	G	Y	I	D	M	S	T	V	D	D	E	T	S	T	A	I	G	A	A	V	T	A	R	G	G	R	F	L	E	A	P	V	S	G	T	K	K	P	A	E	D	G	T	L	I	I	L	A
Template Known Secondary structure			S							S	S										S	T	T								T	T							S																	T	T																		T
Template Predicted Secondary structure
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.									.	.	.	.	.	510	.	.	.	.	.	.	.		.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.														.
Query SS confidence																																							.	.	.	.	.	.	.	.														.
Query Sequence		K	S	S	D	E	T	I	A	K	V	V	A	W	A	S	K	M	G	K	T	P	I	V	V	N	D	C	P	G	F	F	V	N	R	V	L	F	.	.	.	.	.	.	.	.	P	Y	F	A	G	F	S	Q	L	L	R	D	G	.	A	D	F	R	K	I	D	K	V	M	E	K	Q	F	G	W	P	M	G	P	A
Query Conservation																																							.	.	.	.	.	.	.	.														.
Alig confidence																																							.	.	.	.	.	.	.	.														.
Template Conservation
Template Sequence		A	G	D	Q	S	L	F	T	D	A	G	P	A	F	A	A	L	G	K	K	C	L	H	L	G	E	V	G	Q	G	A	R	M	K	L	V	V	N	M	I	M	G	Q	M	M	T	A	L	G	E	G	M	A	L	G	R	N	C	G	L	D	G	G	Q	L	L	E	V	L	D	A	G	A	M	A	N	P	M	F	K
Template Known Secondary structure											T															S	S	T	T																														T	T													S	T	T
Template Predicted Secondary structure
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		539	540	.	.	.	.										.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.
Query Sequence		Y	L	L	D	V	V	.	.	.	.	.	.	.	.	.	G	I	D	T	A	H	H	A	Q	A	V	M	A	A	G	F	P	Q	R	M	Q	K	D	Y	R	D	A	I	D	A	L	F	D	A	N	R	F	G	Q	K	N	G	L	G	F	W	R	Y	K
Query Conservation								.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.																								.	.
Template Conservation																																								.	.
Template Sequence		G	K	G	Q	M	L	L	S	G	E	F	P	T	S	F	P	L	K	H	M	Q	K	D	L	R	L	A	V	E	L	G	D	R	L	G	Q	P	L	.	.	H	G	A	A	T	A	N	E	S	F	K	R	A	R	A	A	G	H	A	D	E	D	F	A
Template Known Secondary structure										T					S	S	B																			T				.	.																T	T		T	T	S	B	G	G
Template Predicted Secondary structure																																								.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions