Job Description P21177 Confidence 99.46% Date Thu Jan 5 11:37:58 GMT 2012 Rank 138 Aligned Residues 208 % Identity 17% Template c3gg2B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:sugar dehydrogenase, udp-glucose/gdp-mannose PDBTitle: crystal structure of udp-glucose 6-dehydrogenase from2 porphyromonas gingivalis bound to product udp-glucuronate Resolution 1.70 Å

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		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.									.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.
Query Sequence		Q	A	A	V	L	G	A	G	I	M	G	G	G	I	A	Y	Q	S	A	W	K	G	V	P	V	V	M	K	D	I	N	D	K	S	L	T	L	G	M	T	E	.	.	.	.	.	.	.	.	A	A	K	L	L	N	K	Q	L	E	R	G	K	I	D	G	L	K	L	A	G	V	I	S	T	I	H	P	T	L	D
Query Conservation																																											.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	I	A	V	V	G	I	G	Y	V	G	L	V	S	A	T	C	F	A	E	L	G	A	N	V	R	C	I	D	T	D	R	N	K	I	E	Q	L	N	S	G	T	I	P	I	Y	E	P	G	L	E	K	M	I	A	R	N	V	K	A	G	.	.	.	.	.	.	.	.	.	.	.	.	R	L	R	F	G	T	E
Template Known Secondary structure									S													T	T								S										T	T			S	S			T	T											T	T	.	.	.	.	.	.	.	.	.	.	.	.	S					S
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140													.	.	.	.	.	.	.
		387		.	.	390	.	.	.	.	.	.	.	.	.	400	.									.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.						.	.	.	.	.	.	.	450	.
Predicted Secondary structure			.															.	.	.	.	.	.	.	.																																										.	.	.	.	.										.
Query SS confidence			.															.	.	.	.	.	.	.	.																																										.	.	.	.	.										.
Query Sequence		Y	.	A	G	F	D	R	V	D	I	V	V	E	A	V	V	.	.	.	.	.	.	.	.	E	N	P	K	V	K	K	A	V	L	A	E	T	E	Q	K	V	R	Q	D	T	V	L	A	S	N	T	S	T	I	P	I	S	E	L	A	N	A	L	E	R	.	.	.	.	.	P	E	N	F	C	G	M	H	F	.
Query Conservation			.															.	.	.	.	.	.	.	.																																										.	.	.	.	.										.
Alig confidence			.															.	.	.	.	.	.	.	.																									.																	.	.	.	.	.										.
Template Conservation																																																		.
Template Sequence		I	E	Q	A	V	P	E	A	D	I	I	F	I	A	V	G	T	P	A	G	E	D	G	S	A	D	M	S	Y	V	L	D	A	A	R	S	I	G	R	A	M	S	R	Y	I	L	I	V	.	T	K	S	T	V	P	V	G	S	Y	R	L	I	R	K	A	I	Q	E	E	L	D	K	R	E	V	L	I	D	F	D
Template Known Secondary structure						G	G	G		S										B		T	T	S	S	B																		S						.			S				T	T																T	T
Template Predicted Secondary structure																																																		.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
				452	.	.	.	.	.	.	.	460	.	.	.									.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.				.	.	500	.	.	.				.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure		.	.													.	.	.	.	.	.	.	.																																			.	.	.							.	.	.
Query SS confidence		.	.													.	.	.	.	.	.	.	.																																			.	.	.							.	.	.
Query Sequence		.	.	F	N	P	V	H	R	M	P	L	V	E	I	.	.	.	.	.	.	.	.	I	R	G	E	K	S	S	D	E	T	I	A	K	V	V	A	W	A	S	K	M	G	K	T	P	I	V	V	N	D	C	P	G	F	.	.	.	F	V	N	R	V	L	.	.	.	F	P	Y	F	A	G	F	S	Q	L	L	R
Query Conservation		.	.													.	.	.	.	.	.	.	.																																			.	.	.							.	.	.
Alig confidence		.	.													.	.	.	.	.	.	.	.																																			.	.	.							.	.	.
Template Conservation
Template Sequence		I	A	S	N	P	E	F	L	K	E	G	N	A	I	D	D	F	M	K	P	D	R	V	V	V	G	V	D	S	D	R	A	R	E	L	I	T	S	L	Y	K	P	M	L	R	V	L	F	M	D	I	A	S	A	E	M	T	K	Y	A	A	N	A	M	L	A	T	R	I	S	F	M	N	D	V	A	N	L	C	E
Template Known Secondary structure											T	T	S							S		S							S	S												T	T	T
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		516		.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		D	.	G	A	D	F	R	K	I	D	K	V	M	E	K	Q	F	G	W	P	M	G	P
Query Conservation			.
Alig confidence			.												.	.
Template Conservation															.	.
Template Sequence		R	V	G	A	D	V	S	M	V	R	L	G	I	.	.	G	S	D	S	R	I	G	S
Template Known Secondary structure				T											.	.		T	S	T	T	T		S
Template Predicted Secondary structure															.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions