Job Description P21177 Confidence 99.30% Date Thu Jan 5 11:37:58 GMT 2012 Rank 153 Aligned Residues 211 % Identity 19% Template c3g79A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ndp-n-acetyl-d-galactosaminuronic acid dehydrogenase; PDBTitle: crystal structure of ndp-n-acetyl-d-galactosaminuronic acid2 dehydrogenase from methanosarcina mazei go1 Resolution 2.40 Å

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		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.			.	.	.	340	.	.	.	.	.	.	.					.	.	350	.	.											.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure																												.	.												.	.	.	.						.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.												.	.	.	.						.	.	.	.	.	.	.	.	.	.
Query Sequence		E	T	P	K	Q	A	A	V	L	G	A	G	I	M	G	G	G	I	A	Y	Q	S	A	W	K	G	.	.	V	P	V	V	M	K	D	I	N	D	K	.	.	.	.	S	L	T	L	G	.	.	.	.	.	.	.	.	.	.	M	T	E	A	A	K	L	L	N	K	Q	L	E	R	G	K	I	D	G	L	K	L
Query Conservation																												.	.												.	.	.	.						.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.												.	.	.	.						.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		G	P	I	K	K	I	G	V	L	G	M	G	Y	V	G	I	P	A	A	V	L	F	A	D	A	P	C	F	E	K	V	L	G	F	Q	R	N	S	K	S	S	G	Y	K	I	E	M	L	N	R	G	E	S	P	L	K	G	E	E	P	G	L	E	E	L	I	G	K	V	V	K	A	G	.	.	.	.	.	.	.
Template Known Secondary structure			S										S	T	T											S	T	T												T	T	T	T	T						T	T	T				S	S			G	G	G											T	T	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.											.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.										.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Query Sequence		A	G	V	I	S	T	I	H	P	T	L	D	Y	A	G	F	D	R	V	D	I	V	V	E	A	V	V	.	.	.	.	.	.	.	.	.	.	E	N	P	K	V	K	K	A	V	L	A	E	T	E	Q	K	V	R	Q	D	T	V	L	A	S	N	T	S	T	I	P	.	.	.	.	.	.	.	.	.	I	S	E
Query Conservation																													.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	K	F	E	C	T	P	D	F	S	R	I	S	E	L	D	A	V	T	L	A	I	Q	T	P	F	A	N	P	K	D	L	E	P	D	F	S	A	L	I	D	G	I	R	N	V	G	K	Y	L	K	P	G	M	L	V	V	L	E	S	T	I	T	P	G	T	T	E	G	M	A	K	Q	I	L	E
Template Known Secondary structure		.	.	.	.	.						S		G	G	G	G	G	G		S												S	S			S	S																			T	T							S				T	T	T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.			460	.	.								.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.							.	.	.	500
Predicted Secondary structure																										.	.				.	.	.	.	.	.	.																																			.	.	.	.	.	.
Query SS confidence																										.	.				.	.	.	.	.	.	.																																			.	.	.	.	.	.
Query Sequence		L	A	N	A	L	E	R	P	E	N	F	C	G	M	H	F	F	N	P	V	H	R	M	P	.	.	L	V	E	.	.	.	.	.	.	.	I	I	R	G	E	K	S	S	D	E	T	I	A	K	V	V	A	W	A	S	K	M	G	K	T	P	I	V	V	N	D	C	P	G	.	.	.	.	.	.	F	F	V	N
Query Conservation																										.	.				.	.	.	.	.	.	.																																			.	.	.	.	.	.
Alig confidence																.	.									.	.				.	.	.	.	.	.	.					.	.																													.	.	.	.	.	.
Template Conservation																.	.																									.	.
Template Sequence		E	E	S	G	L	K	A	G	E	D	F	A	L	A	.	.	H	A	P	E	R	V	M	V	G	R	L	L	K	N	I	R	E	H	D	R	I	V	G	G	.	.	I	D	E	A	S	T	K	R	A	V	E	L	Y	S	P	V	L	T	V	G	Q	V	I	P	M	S	A	T	A	A	E	V	T	K	T	A	E	N
Template Known Secondary structure								B	T	T	T	B				.	.								T	T	S								S							.	.	S	S												G	G	G		S	S
Template Predicted Secondary structure																.	.																									.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		501	.	.	.				.	.	.	.	.	510	.	.	.	.	.	.		.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.													.
Query SS confidence						.	.	.													.
Query Sequence		R	V	L	F	.	.	.	P	Y	F	A	G	F	S	Q	L	L	R	D	.	G	A	D	F	R	K	I	D	K	V	M	E	K	Q	F	G	W	P	M	G	P
Query Conservation						.	.	.													.
Alig confidence						.	.	.													.
Template Conservation
Template Sequence		T	F	R	D	L	Q	I	A	A	I	N	Q	L	A	L	Y	C	E	A	M	G	I	N	V	Y	D	V	R	T	G	V	D	S	L	K	G	E	G	I	T	R
Template Known Secondary structure																					T	T												T	S			S	S	S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions