Job Description P21177 Confidence 99.70% Date Thu Jan 5 11:37:58 GMT 2012 Rank 96 Aligned Residues 237 % Identity 15% Template c3dzbA_ PDB info PDB header:biosynthetic protein Chain: A: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of prephenate dehydrogenase from streptococcus2 thermophilus Resolution 2.46 Å

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		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.		.	.	390
Predicted Secondary structure																										.	.																																																			.
Query SS confidence																										.	.																																																			.
Query Sequence		K	Q	A	A	V	L	G	A	G	I	M	G	G	G	I	A	Y	Q	S	A	W	K	G	V	.	.	P	V	V	M	K	D	I	N	D	K	S	L	T	L	G	M	T	E	A	A	K	L	L	N	K	Q	L	E	R	G	K	I	D	G	L	K	L	A	G	V	I	S	T	I	H	P	T	L	D	Y	.	A	G	F
Query Conservation																										.	.																																																			.
Alig confidence																										.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	T	I	Y	I	A	G	L	G	L	I	G	G	S	L	A	L	G	I	K	R	D	H	P	D	Y	E	I	L	G	Y	N	R	S	D	Y	S	R	N	I	A	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	I	V	D	R	A	T	G	D	F	K	E	F	A
Template Known Secondary structure							S			S												T	T		T	T	S							S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S		S				S						G
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.																							.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.					.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.							460
Predicted Secondary structure																																																		.	.	.	.																						.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.																						.	.	.	.	.	.
Query Sequence		D	R	V	D	I	V	V	E	A	V	V	E	N	P	K	V	K	K	A	V	L	A	E	T	E	Q	K	V	R	Q	D	T	V	L	A	S	N	T	S	T	I	P	I	S	E	L	A	N	.	.	.	.	A	L	E	R	P	E	N	F	C	G	M	H	F	F	N	P	V	H	R	M	P	.	.	.	.	.	.	L
Query Conservation																																																		.	.	.	.																						.	.	.	.	.	.
Alig confidence													.	.																																				.	.	.	.																						.	.	.	.	.	.
Template Conservation													.	.
Template Sequence		P	L	A	D	V	I	I	L	A	V	P	.	.	I	K	Q	T	X	A	Y	L	K	E	L	A	D	L	D	L	K	D	N	V	I	I	T	D	A	G	S	T	K	R	E	I	V	E	A	A	E	R	Y	L	T	G	K	N	V	Q	F	V	G	S	H	P	X	A	G	S	A	A	D	V	T	L	F	E	N	A	Y
Template Known Secondary structure		G	G		S						S		.	.												T	T	S				T	T								S														T	T	S	S										B						T	T	T	T	T	T	S
Template Predicted Secondary structure													.	.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.		.	.	.	.	.	.	.	500	.	.			.	.	.	.	.	.	.	510	.			.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
Predicted Secondary structure																																		.											.	.										.	.																						.	.	.
Query SS confidence																																		.											.	.										.	.																						.	.	.
Query Sequence		V	E	I	I	R	G	E	K	S	S	D	E	T	I	A	K	V	V	A	W	A	S	K	M	G	K	T	P	I	V	V	N	.	D	C	P	G	F	F	V	N	R	V	.	.	L	F	P	Y	F	A	G	F	S	.	.	Q	L	L	R	D	G	A	D	F	R	K	I	D	K	V	M	E	K	Q	F	G	.	.	.
Query Conservation																																		.											.	.										.	.																						.	.	.
Alig confidence																																		.											.	.										.	.																						.	.	.
Template Conservation
Template Sequence		Y	I	F	T	P	T	S	L	T	K	E	T	T	I	P	E	L	K	D	I	L	S	G	L	K	S	R	Y	V	E	I	D	A	A	E	H	D	R	V	T	S	Q	I	S	H	F	P	H	L	L	A	S	G	L	X	E	Q	A	A	D	Y	A	Q	A	H	E	X	T	N	H	F	A	A	G	G	F	R	D	X	T
Template Known Secondary structure								T	T			T	T									G	G	G	G																				T																						T
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
				533	.	.	.	.	.	.	540	.	.	.	.										.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.
Predicted Secondary structure		.	.													.	.	.	.	.	.	.	.	.
Query SS confidence		.	.													.	.	.	.	.	.	.	.	.
Query Sequence		.	.	W	P	M	G	P	A	Y	L	L	D	V	V	.	.	.	.	.	.	.	.	.	G	I	D	T	A	H	H	A	Q	A	V	M	A	A	G	F	P	Q	R	M	Q	K	D	Y	R	D	A	I	D	A
Query Conservation		.	.													.	.	.	.	.	.	.	.	.
Alig confidence		.	.													.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	I	A	E	S	E	P	G	X	W	A	S	I	L	X	T	N	G	P	A	V	L	D	R	I	E	D	F	K	K	R	L	D	H	V	A	D	L	I	K	A	E	D	E	S	A	I	W	E	F	F	D	N
Template Known Secondary structure		G	G	G	G	S												T																								T	T
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions