Job Description P21177 Confidence 99.58% Date Thu Jan 5 11:37:58 GMT 2012 Rank 112 Aligned Residues 223 % Identity 10% Template c2i76B_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein tm1727 from thermotoga maritima Resolution 3.00 Å

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		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	V	L	G	A	G	I	M	G	G	G	I	A	Y	Q	S	A	W	K	G	V	P	V	V	M	K	D	I	N	D	K	S	L	T	L	G	M	T	E	A	A	K	L	L	N	K	Q	L	E	R	G	K	I	D	G	L	K	L	A	G	V	I	S	T	I	H	P	T	L	D	Y	A	G	F	D	R	V	D	I
Query Conservation
Alig confidence																							.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	N	F	V	G	T	G	T	L	T	R	F	F	L	E	C	L	K	I	G	Y	.	.	.	.	I	L	S	R	S	I	D	R	A	R	N	L	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Y	G	G	K	A	A	T	L	E	K	H	P	E	V
Template Known Secondary structure								S	T	T													.	.	.	.	B			S	S									T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T					T	T
Template Predicted Secondary structure																							.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.					.	.	.	.	.	.	30	.	.	.	.	.	.	.																											.	.	40	.	.	.	.	.	.	.	.	.	50	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	E	A	V	V	E	N	P	K	V	K	K	A	V	L	A	E	T	E	Q	K	V	R	Q	D	T	V	L	A	S	N	T	S	T	I	P	I	S	E	L	A	N	A	L	E	R	P	E	N	F	C	G	M	H	F	F	N	P	V	H	R	M	P	L	V	E	I	I	R	G	E	K	S	S	D	E	T	I	A
Query Conservation
Alig confidence										.	.	.	.	.																																.	.
Template Conservation										.	.	.	.	.																																.	.
Template Sequence		V	F	V	I	V	P	D	R	.	.	.	.	.	Y	I	K	T	V	A	N	H	L	N	L	G	D	A	V	L	V	H	C	S	G	F	L	S	S	E	I	F	K	K	S	.	.	G	R	A	S	I	H	P	N	F	S	F	L	E	K	A	L	E	X	K	D	Q	I	V	F	G	L	E	G	D	E	R	G	L	P
Template Known Secondary structure						S				.	.	.	.	.							T	T	T			S	S								S	S	S		S	T	T	T		S	S	.	.	S								S				T	T	G	G	G		G	G	G									T	T
Template Predicted Secondary structure										.	.	.	.	.																																.	.
Template SS confidence
		60	.	.	.	.	.	.	.						.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.							.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.											.	.	.	.	.	.	.	530	.	.	.	.	.		.	.	.
Predicted Secondary structure																							.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.														.
Query SS confidence																							.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.														.
Query Sequence		K	V	V	A	W	A	S	K	M	G	K	T	P	I	V	V	N	D	C	P	G	.	.	.	.	.	.	F	F	V	N	R	V	L	F	P	Y	F	A	G	F	S	Q	L	L	R	D	G	A	D	F	R	K	.	.	.	.	.	.	.	.	.	.	I	D	K	V	M	E	K	Q	F	G	W	P	M	.	G	P	A
Query Conservation																							.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.														.
Alig confidence																							.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.														.
Template Conservation
Template Sequence		I	V	K	K	I	A	E	E	I	S	G	K	Y	F	V	I	E	K	K	K	A	Y	H	L	A	A	V	I	A	S	N	F	P	V	A	L	A	Y	L	S	K	R	I	Y	T	L	L	G	L	D	E	P	E	L	L	I	H	T	L	X	K	G	V	A	D	N	I	K	K	X	R	V	E	C	S	L	T	G	P	V
Template Known Secondary structure											S	S																				T																T	T		S																				S								S
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	L	D	V	V	G	I	D	T	A	H	H	A	Q	A	V	M	A	A	G	F	P	Q	R	M	Q	K	D	Y	R	D	A	I	D	A	L	F	D
Query Conservation
Alig confidence																									.	.
Template Conservation																									.	.
Template Sequence		K	R	G	D	W	Q	V	V	E	E	E	R	R	E	Y	E	K	I	F	G	N	T	V	.	.	L	Y	D	E	I	V	K	L	L	R	E	V	A	E
Template Known Secondary structure																				S	S		S		.	.
Template Predicted Secondary structure																									.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions