Job Description P21177 Confidence 100.00% Date Thu Jan 5 11:37:58 GMT 2012 Rank 4 Aligned Residues 431 % Identity 31% Template c1zcjA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:peroxisomal bifunctional enzyme; PDBTitle: crystal structure of 3-hydroxyacyl-coa dehydrogenase Resolution 1.90 Å

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		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.						.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.
Query SS confidence																												.	.	.	.	.
Query Sequence		T	N	E	A	R	A	L	V	G	I	F	L	N	D	Q	Y	V	K	G	K	A	K	K	L	T	K	.	.	.	.	.	D	V	E	T	P	K	Q	A	A	V	L	G	A	G	I	M	G	G	G	I	A	Y	Q	S	A	W	K	G	V	P	V	V	M	K	D	I	N	D	K	S	L	T	L	G	M	T	E	A	A
Query Conservation																												.	.	.	.	.
Alig confidence																												.	.	.	.	.
Template Conservation
Template Sequence		S	G	Q	A	K	A	L	Q	Y	A	F	F	A	E	K	S	A	N	K	W	S	T	P	S	G	A	S	W	K	T	A	S	A	Q	P	V	S	S	V	G	V	L	G	L	G	T	M	G	R	G	I	A	I	S	F	A	R	V	G	I	S	V	V	A	V	E	S	D	P	K	Q	L	D	A	A	K	K	I	I	T
Template Known Secondary structure														G	G	G	G	G	G	S		B		T	T			B	T	T	T															S												T	T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	L	N	K	Q	L	E	R	G	K	I	D	G	L	K	L	A	G	V	I	S	T	I	H	P	T	L	D	Y	A	G	F	D	R	V	D	I	V	V	E	A	V	V	E	N	P	K	V	K	K	A	V	L	A	E	T	E	Q	K	V	R	Q	D	T	V	L	A	S	N	T	S	T	I	P	I	S	E	L	A
Query Conservation
Alig confidence																	.	.
Template Conservation																	.	.
Template Sequence		F	T	L	E	K	E	A	S	R	A	H	Q	N	G	Q	.	.	A	S	A	K	P	K	L	R	F	S	S	S	T	K	E	L	S	T	V	D	L	V	V	E	A	V	F	E	D	M	N	L	K	K	K	V	F	A	E	L	S	A	L	C	K	P	G	A	F	L	C	T	N	T	S	A	L	N	V	D	D	I	A
Template Known Secondary structure														T	T		.	.											S		G	G	G	G	T	T		S								S																S		T	T								S	S	S
Template Predicted Secondary structure																	.	.
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.			.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	L	E	R	P	E	N	F	C	G	M	H	F	F	N	P	V	H	R	M	P	L	V	E	I	I	R	G	E	K	S	S	D	E	T	I	A	K	V	V	A	W	A	S	K	M	G	K	T	P	I	V	V	N	D	C	P	G	F	F	V	N	R	V	L	F	P	Y	F	A	G	F	S	Q	L	L	R	D	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	S	T	D	R	P	Q	L	V	I	G	T	H	F	F	S	P	A	H	V	M	R	L	L	E	V	I	P	S	R	Y	S	S	P	T	T	I	A	T	V	M	S	L	S	K	K	I	G	K	I	G	V	V	V	G	N	C	Y	G	F	V	G	N	R	M	L	A	P	Y	Y	N	Q	G	F	F	L	L	E	E	G
Template Known Secondary structure		T	T	S	S		G	G	G								S	S	T	T	T										S	S																T	T						B			S	T	T	T	T																		T	T
Template Predicted Secondary structure
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
		518	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.										.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.
Query Sequence		A	D	F	R	K	I	D	K	V	M	E	K	Q	F	G	W	P	M	G	P	A	Y	L	L	D	V	V	G	I	D	T	A	H	H	A	Q	A	V	M	A	A	G	F	P	Q	R	.	.	.	.	.	.	.	.	.	M	Q	K	D	Y	R	D	A	I	D	A	L	F	D	A	N	R	F	G	Q	K	N	G	L	G
Query Conservation																																																.	.	.	.	.	.	.	.	.
Alig confidence													.																																			.	.	.	.	.	.	.	.	.
Template Conservation													.
Template Sequence		S	K	P	E	D	V	D	G	V	L	E	.	E	F	G	F	K	M	G	P	F	R	V	S	D	L	A	G	L	D	V	G	W	K	I	R	K	G	Q	G	L	T	G	P	S	L	P	P	G	T	P	V	R	K	R	G	N	S	R	Y	S	P	L	G	D	M	L	C	E	A	G	R	F	G	Q	K	T	G	K	G
Template Known Secondary structure													.			T		S	S																					T	T	S	S	S	S				T	T			T	T			T	T					T								T	T			B	G	G	G	T	B	S
Template Predicted Secondary structure													.
Template SS confidence
		499	500	.	.	.	.	.	.	.	.	.		510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
		589	590	.	.	.	.	.	.	.	.	.			600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		F	W	R	Y	K	E	D	S	K	G	K	.	.	P	K	K	E	E	D	A	A	V	E	D	L	L	A	E	V	S	Q	P	K	R	D	F	S	E	E	E	I	I	A	R	M	M	I	P	M	V	N	E	V	V	R	C	L	E	E	G	I	I	A	T	P	A	E	A	D	M	A	L	V	Y	G	L	G	F	P	P
Query Conservation													.	.
Alig confidence													.	.
Template Conservation
Template Sequence		W	Y	Q	Y	D	K	P	L	G	R	I	H	K	P	D	P	W	L	S	T	F	L	S	Q	Y	R	E	V	H	H	I	E	Q	R	T	I	S	K	E	E	I	L	E	R	C	L	Y	S	L	I	N	E	A	F	R	I	L	E	E	G	M	A	A	R	P	E	H	I	D	V	I	Y	L	H	G	Y	G	W	P	R
Template Known Secondary structure		S				S	S	T	T		S																			T	T																													T	T	S	B	S													S				G
Template Predicted Secondary structure
Template SS confidence
		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.
		667	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.		.	.	.			.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.
Predicted Secondary structure																												.				.	.
Query SS confidence																												.				.	.
Query Sequence		F	H	G	G	A	F	R	W	L	D	T	L	G	S	A	K	Y	L	D	M	A	Q	Q	Y	Q	H	.	L	G	P	.	.	L	Y	E	V	P	E	G	L	R	N	K	A	R	H	N	E	P	Y	Y	P	P
Query Conservation																												.				.	.
Alig confidence																												.				.	.
Template Conservation
Template Sequence		H	K	G	G	P	M	F	Y	A	A	S	V	G	L	P	T	V	L	E	K	L	Q	K	Y	Y	R	Q	N	P	D	I	P	Q	L	E	P	S	D	Y	L	R	R	L	V	A	Q	G	S	P	P	L	K	E
Template Known Secondary structure		G	G																											T	T		G	G	G	S											T	T				G	G	G
Template Predicted Secondary structure
Template SS confidence
		658	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710