Job Description P21177 Confidence 99.46% Date Thu Jan 5 11:37:58 GMT 2012 Rank 139 Aligned Residues 206 % Identity 17% Template c1mv8A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:gdp-mannose 6-dehydrogenase; PDBTitle: 1.55 a crystal structure of a ternary complex of gdp-mannose2 dehydrogenase from psuedomonas aeruginosa Resolution 1.55 Å

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		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.									.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.
Query Sequence		Q	A	A	V	L	G	A	G	I	M	G	G	G	I	A	Y	Q	S	A	W	K	G	V	P	V	V	M	K	D	I	N	D	K	S	L	T	L	G	M	T	.	.	.	.	.	.	.	.	E	A	A	K	L	L	N	K	Q	L	E	R	G	K	I	D	G	L	K	L	A	G	V	I	S	T	I	H	P	T	L	D
Query Conservation																																										.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	I	S	I	F	G	L	G	Y	V	G	A	V	C	A	G	C	L	S	A	R	G	H	E	V	I	G	V	D	V	S	S	T	K	I	D	L	I	N	Q	G	K	S	P	I	V	E	P	G	L	E	A	L	L	Q	Q	G	R	Q	T	G	.	.	.	.	.	.	.	.	.	.	.	.	R	L	S	G	T	T	D
Template Known Secondary structure									S	T	T											T	T								S										T	T			S	S			T	T											T	T	.	.	.	.	.	.	.	.	.	.	.	.						S
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.													.	.	.	.	.	.	.
		387		.	.	390	.	.	.	.	.	.	.	.	.	400	.									.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.				.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure			.															.	.	.	.	.	.	.	.																						.	.	.
Query SS confidence			.															.	.	.	.	.	.	.	.																						.	.	.
Query Sequence		Y	.	A	G	F	D	R	V	D	I	V	V	E	A	V	V	.	.	.	.	.	.	.	.	E	N	P	K	V	K	K	A	V	L	A	E	T	E	Q	K	V	R	Q	D	T	.	.	.	V	L	A	S	N	T	S	T	I	P	I	S	E	L	A	N	A	L	E	R	P	E	N	F	C	G	M	H	F	F	N	P
Query Conservation			.															.	.	.	.	.	.	.	.																						.	.	.
Alig confidence			.															.	.	.	.	.	.	.	.																						.	.	.
Template Conservation
Template Sequence		F	K	K	A	V	L	D	S	D	V	S	F	I	C	V	G	T	P	S	K	K	N	G	D	L	D	L	G	Y	I	E	T	V	C	R	E	I	G	F	A	I	R	E	K	S	E	R	H	T	V	V	V	R	S	T	V	L	P	G	T	V	N	N	V	V	I	P	L	I	E	D	C	S	G	K	K	A	G	V	D
Template Known Secondary structure								T		S										B		T	T	S	S	B																	T	T			S								S				T	T					T										S			B	T	T	T
Template Predicted Secondary structure
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		455	.	.	.	.	460	.	.																		.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.					.	.	.	.	.	.	.	500	.				.	.	.	.	.	.	.	.	510
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.										.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.										.	.	.
Query Sequence		V	H	R	M	P	L	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	I	R	G	E	K	S	S	D	E	T	I	A	K	V	V	A	W	A	S	K	M	G	K	T	P	I	V	V	N	.	.	.	.	D	C	P	G	F	F	V	N	R	.	.	.	V	L	F	P	Y	F	A	G	F
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.										.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.																									.	.	.	.										.	.	.
Template Conservation																															.	.
Template Sequence		F	G	V	G	T	N	P	E	F	L	R	E	S	T	A	I	K	D	Y	D	F	P	P	M	T	V	I	G	E	.	.	L	D	K	Q	T	G	D	L	L	E	E	I	Y	R	E	L	D	A	P	I	I	R	K	T	V	E	V	A	E	M	I	K	Y	T	C	N	V	W	H	A	A	K	V	T	F	A	N	E	I
Template Known Secondary structure		B											T	T	S							S		S							.	.	S	S												T	T	S	S	S
Template Predicted Secondary structure																															.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.			.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		511	.	.	.	.	.		.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		S	Q	L	L	R	D	.	G	A	D	F	R	K	I	D	K	V	M	E	K	Q	F	G	W	P	M	G
Query Conservation								.
Alig confidence								.												.	.
Template Conservation																				.	.
Template Sequence		G	N	I	A	K	A	V	G	V	D	G	R	E	V	M	D	V	I	.	.	C	Q	D	H	K	L	N
Template Known Secondary structure								T	T	S										.	.	T	T		T	T	T	T
Template Predicted Secondary structure																				.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.			.	.	.	.	250	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions