Return to main results Retrieve Phyre Job Id

Job DescriptionP21177
Confidence100.00%DateThu Jan 5 11:37:58 GMT 2012
Rank7Aligned Residues281
% Identity36%Templatec1m75B_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:3-hydroxyacyl-coa dehydrogenase; PDBTitle: crystal structure of the n208s mutant of l-3-hydroxyacyl-2 coa dehydrogenase in complex with nad and acetoacetyl-coa
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   313......320.........330.........340.........350.........360.........370. ........380.......
Predicted Secondary structure 














.....





Query SS confidence 


























































. . . . .















Query Sequence  PKQAAVLGAGIMGGGIAYQSAWKGVPVVMKDINDKSLTLGMTEAAKLLNKQLERGKIDG. . . . . LKLAGVISTIHPTLDY
Query Conservation 
  
 




 

  

   
 

  
 
 
     
      
   
      
 
  .....         
      
Alig confidence 


























































.....















Template Conservation 









 

  

   
  
  
 
 
     
      
   
                         
    
 
Template Sequence  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA
Template Known Secondary structure 



STT

SSTTT
S
G
Template Predicted Secondary structure 

























Template SS confidence 















































































   15....20.........30.........40.........50.........60.........70.........80.........90....
 
   388.390.........400.........410.........420.........430.........440.........450.........460......
Predicted Secondary structure  .






























Query SS confidence  .














































































Query Sequence  . AGFDRVDIVVEAVVENPKVKKAVLAETEQKVRQDTVLASNTSTIPISELANALERPENFCGMHFFNPVHRMPLVEIIRG
Query Conservation  .  
  







 
 
  
  
   
        








 
  

     
 
 

 




     




  
Alig confidence  .














































































Template Conservation        







 
 
  
      
        

 



      

       
 

 
   
     




  
Template Sequence  ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKT
Template Known Secondary structure  GGTGGG
S


S
S
TT


SSS
TTSS
GGG

SSTTT



Template Predicted Secondary structure 


































Template SS confidence 















































































   95....100.........110.........120.........130.........140.........150.........160.........170....
 
   467..470.........480.........490.........500.........510....... ..520.........530.........540.....
Predicted Secondary structure 












.







Query SS confidence 


















































.



























Query Sequence  EKSSDETIAKVVAWASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDG. ADFRKIDKVMEKQFGWPMGPAYLLDVVG
Query Conservation    
              


 

 
 
 



 


      

  
  

.     

 
     
 
 


 
 
  
Alig confidence 


















































.



























Template Conservation    
              


  
 
 
  
 
 

       

  

 

 
  



 
     
   


   
  
Template Sequence  PMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVSRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG
Template Known Secondary structure  TT

TT

S
TTTTTSS


SS

Template Predicted Secondary structure 






















Template SS confidence 















































































   175....180.........190.........200.........210.........220.........230.........240.........250....
 
   546...550.........560.........570.........580.........590...
Predicted Secondary structure 



















Query SS confidence 















































Query Sequence  IDTAHHAQAVMAAGFPQRMQKDYRDAIDALFDANRFGQKNGLGFWRYK
Query Conservation 


   
   
              
   

  
 

 


 


 
 
Alig confidence 















































Template Conservation 

                        
   
  
  
 
 
 


 
 
Template Sequence  LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK
Template Known Secondary structure 
TT
STT


TT

BGGGTBSSSB

Template Predicted Secondary structure 

























Template SS confidence 















































   255....260.........270.........280.........290.........300..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions