Job Description P33916 Confidence 100.00% Date Thu Jan 5 11:52:44 GMT 2012 Rank 18 Aligned Residues 288 % Identity 25% Template c1vciA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sugar-binding transport atp-binding protein; PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp Resolution 2.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	Q	T	L	L	A	I	E	N	L	S	V	G	F	R	H	Q	Q	T	V	R	T	V	V	N	D	V	S	L	Q	I	E	A	G	E	T	L	A	L	V	G	E	S	G	S	G	K	S	V	T	A	L	S	I	L	R	L	L	P	S	P	P	V	E	Y	L	S	G	D	I	R	F	H	G	E	S	L	L	H
Query Conservation
Alig confidence					.	.											.	.	.	.																																									.	.	.	.	.
Template Conservation					.	.											.	.	.	.																																									.	.	.	.	.
Template Sequence		M	V	E	.	.	V	K	L	E	N	L	T	K	R	F	.	.	.	.	G	N	F	T	A	V	N	K	L	N	L	T	I	K	D	G	E	F	L	V	L	L	G	P	S	G	C	G	K	T	T	T	L	R	M	I	A	G	L	E	.	.	.	.	.	E	P	T	E	G	R	I	Y	F	G	D	R	D	V	T	Y
Template Known Secondary structure					.	.											.	.	.	.	T	T													T	T									T	T	S	S										T	S	S	.	.	.	.	.			S							T	T				T	T
Template Predicted Secondary structure					.	.											.	.	.	.																																									.	.	.	.	.
Template SS confidence
		10	.	.			.	.	.	.	.	.	.	20	.	.					.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.						.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	D	Q	T	L	R	G	V	R	G	N	K	I	A	M	I	F	Q	E	P	M	V	S	L	N	P	L	H	T	L	E	K	Q	L	Y	E	V	L	S	L	H	R	G	M	R	R	E	A	A	R	G	E	I	L	N	C	L	D	R	V	G	I	R	Q	A	A	K	R	L	T	D	Y	P	H	Q	L	S	G	G
Query Conservation
Alig confidence							.	.	.	.	.	.											.	.	.	.	.	.	.	.												.	.	.																								.	.	.
Template Conservation							.	.	.	.	.	.											.	.	.	.	.	.	.	.												.	.	.																								.	.	.
Template Sequence		L	P	P	K	D	.	.	.	.	.	.	R	N	I	S	M	V	F	Q	H	M	.	.	.	.	.	.	.	.	T	V	Y	E	N	I	A	F	P	L	K	.	.	.	K	F	P	K	D	E	I	D	K	R	V	R	W	A	A	E	L	L	Q	I	E	E	L	.	.	.	L	N	R	Y	P	A	Q	L	S	G	G
Template Known Secondary structure		S		G	G	G	.	.	.	.	.	.	T	T									.	.	.	.	.	.	.	.								T	T			.	.	.																		T	T		G	G	G	.	.	.	T	T			G	G	G			S	S
Template Predicted Secondary structure							.	.	.	.	.	.											.	.	.	.	.	.	.	.												.	.	.																								.	.	.
Template SS confidence
		79	80	.	.	.							.	.	.	.	.	.	90	.	.	.									.	.	.	.	.	.	100	.	.	.	.				.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.				.	.	130	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	Q	R	V	M	I	A	M	A	L	L	T	R	P	E	L	L	I	A	D	E	P	T	T	A	L	D	V	S	V	Q	A	Q	I	L	Q	L	L	R	E	L	Q	G	E	L	N	M	G	M	L	F	I	T	H	N	L	S	I	V	R	K	L	A	H	R	V	A	V	M	Q	N	G	R	C	V	E	Q	N	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	R	Q	R	V	A	V	A	R	A	I	V	V	E	P	D	V	L	L	M	D	E	P	L	S	N	L	D	A	K	L	R	V	A	M	R	A	E	I	K	K	L	Q	Q	K	L	K	V	T	T	I	Y	V	T	H	D	Q	V	E	A	M	T	M	G	D	R	I	A	V	M	N	R	G	Q	L	L	Q	I	G	S
Template Known Secondary structure													T	T			S						S	T	T	T	T	S																												S										S							T	T
Template Predicted Secondary structure
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	T	L	F	A	S	P	T	H	P	Y	T	Q	K	L	L	N	S	E	P	S	G	D	P	V	P	L	P	E	P	A	S	T	L	L	D	V	E	Q	L	Q	V	A	F	P	I	R	K	G	I	L	K	R	I	V	D	H	N	V	V	V	K	N	I	S	F	T	L	R	A	G	E	T	L	G	L	V	G	E
Query Conservation
Alig confidence																																																						.	.	.	.	.	.	.	.											.
Template Conservation																																																						.	.	.	.	.	.	.	.											.
Template Sequence		P	T	E	V	Y	L	R	P	N	S	V	F	V	A	T	F	I	G	A	P	E	M	N	I	L	E	V	S	V	G	D	G	Y	L	E	G	R	G	F	R	I	E	L	P	Q	M	D	L	L	K	D	Y	.	.	.	.	.	.	.	.	V	G	K	T	V	L	F	G	I	R	.	P	E	H	M	T	V	E	G	V
Template Known Secondary structure								S		S	B							S	S	S	S											S	S					T	T										T	T	G	G	G	.	.	.	.	.	.	.	.	B	T	S								.	G	G	G				S
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.											.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.									.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	S	G	K	S	T	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	M	K	R	T	A	R	L
Template Known Secondary structure				S	S
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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