Job Description P76280 Confidence 100.00% Date Thu Jan 5 12:21:33 GMT 2012 Rank 5 Aligned Residues 201 % Identity 18% Template c2plqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:aliphatic amidase; PDBTitle: crystal structure of the amidase from geobacillus pallidus rapc8 Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.					.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.				.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure												.	.	.	.																							.	.																		.	.	.
Query SS confidence												.	.	.	.																							.	.																		.	.	.
Query Sequence		W	K	V	A	A	A	Q	Y	E	P	.	.	.	.	R	K	T	S	L	T	E	Q	V	A	H	H	L	E	F	V	R	A	A	A	R	Q	.	.	Q	C	Q	L	L	V	F	P	S	L	S	L	L	G	C	D	Y	.	.	.	S	R	R	A	L	P	A	P	P	D	L	S	L	L	D	P	L	C	Y	A	A	T
Query Conservation												.	.	.	.																							.	.																		.	.	.
Alig confidence												.	.	.	.																							.	.																		.	.	.
Template Conservation
Template Sequence		V	G	I	A	V	V	N	Y	K	M	P	R	L	H	T	K	A	E	V	I	E	N	A	K	K	I	A	D	M	V	V	G	M	K	Q	G	L	P	G	M	D	L	V	V	F	P	E	Y	S	T	M	G	I	M	Y	D	Q	D	E	M	F	A	T	A	A	S	I	P	G	E	E	T	A	I	F	A	E	A	C	K
Template Known Secondary structure										B						S																							T	T								T	T	T	T	T					S									B		S	S	S
Template Predicted Secondary structure
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		75	.	.	.	.	80	.	.	.	.	.						.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.																		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure													.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	W	R	M	T	I	I	A	G	L	P	.	.	.	.	.	V	E	Y	N	D	R	F	I	R	G	I	A	V	F	A	P	W	R	K	T	P	G	I	Y	H	Q	S	H	G	A	C	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	R	S	R	T	I	T	V	V	D	E	Q	P	Q
Query Conservation													.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	A	D	T	W	G	V	F	S	L	T	G	E	K	H	E	D	H	P	N	K	A	P	Y	N	T	L	V	L	I	N	N	K	G	E	I	V	Q	K	Y	R	K	I	I	P	W	C	P	I	E	G	W	Y	P	G	D	T	T	Y	V	T	E	G	P	K	G	L	K	I	S	L	I	V	C	D	D	G	N	Y	P
Template Known Secondary structure				T													T	T	T	T	S	S											T	T	S									S	S			T	T	T				B											G	G	G								G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		133	.	.	.	.	.				.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.										.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.
Predicted Secondary structure								.	.	.																																									.	.	.	.	.	.	.	.	.																					.
Query SS confidence								.	.	.																																									.	.	.	.	.	.	.	.	.																					.
Query Sequence		G	M	D	M	D	P	.	.	.	T	C	S	L	F	T	T	G	Q	C	L	G	E	P	D	L	L	A	S	A	R	R	L	Q	F	F	S	H	Q	Y	S	I	A	V	L	M	A	N	A	R	.	.	.	.	.	.	.	.	.	G	N	S	A	L	W	D	E	Y	G	R	L	I	V	R	A	D	R	G	S	.	L
Query Conservation								.	.	.																																									.	.	.	.	.	.	.	.	.																					.
Alig confidence								.	.	.																																									.	.	.	.	.	.	.	.	.																					.
Template Conservation
Template Sequence		E	I	W	R	D	C	A	M	K	G	A	E	L	I	V	R	C	Q	G	Y	M	Y	P	A	K	E	Q	Q	I	M	M	A	K	A	M	A	W	A	N	N	T	Y	V	A	V	A	N	A	T	G	F	D	G	V	Y	S	Y	F	G	H	S	A	I	I	G	F	D	G	R	T	L	G	E	C	G	T	E	E	N	G
Template Known Secondary structure										T	T		S									B	T	T																T	T													S	S												T	T	S								S		T	T
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	V	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	Q	Y	A	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions