Job Description P75788 Confidence 0.72% Date Thu Jan 5 12:14:09 GMT 2012 Rank 43 Aligned Residues 223 % Identity 10% Template c3rkoM_ PDB info PDB header:oxidoreductase Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.					.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.																							.	.
Query SS confidence																																											.	.	.	.																							.	.
Query Sequence		F	F	Q	L	L	I	L	V	G	I	G	L	S	F	F	V	P	F	A	P	K	S	W	P	A	A	I	D	W	H	T	I	I	T	L	S	G	L	M	L	L	.	.	.	.	T	K	G	V	E	L	S	G	Y	F	D	V	L	G	R	K	M	V	R	R	F	A	.	.	T	E	R	R	L	A	M	F	M	V	L
Query Conservation																																											.	.	.	.																							.	.
Alig confidence																																											.	.	.	.																							.	.
Template Conservation
Template Sequence		D	L	A	G	I	L	L	K	T	A	A	Y	G	L	L	R	F	S	L	P	L	F	P	N	A	S	A	E	F	A	P	I	A	M	W	L	G	V	I	G	I	F	Y	G	A	W	M	A	F	A	Q	T	D	I	K	R	L	I	A	Y	T	S	V	S	H	M	G	F	V	L	I	A	I	Y	T	G	S	Q	L	A
Template Known Secondary structure						T														T	T	T	S																												T		S	B																					T	S
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120														.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	A	L	L	S	T	F	L	T	N	D	V	A	L	F	I	V	V	P	L	T	I	T	L	K	R	L	C	E	I	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	L	I	I	F	E	A	L	A	V	N	A	G	S	L	L	T	P	I	G	N	P	Q	N	I	L	I	W	G	R	S	G	L
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	Q	G	A	V	I	Q	M	I	A	H	G	L	S	A	A	G	L	F	I	L	C	G	Q	L	Y	E	R	I	H	T	R	D	M	R	M	M	G	G	L	W	S	K	M	K	W	L	P	A	L	S	L	F	F	A	V	A	T	L	G	M	P	G	T	G	N	F	V	G	E	F	M	I	L	F	G	S	F	Q	V
Template Known Secondary structure																																		B	G	G	G			S	G	G	G	T		S	S													S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	A	G	F	I	A	Q	M	A	P	L	A	G	A	M	M	L	T	L	L	L	L	C	W	C	C	F	P	G	K	A	M	Q	Y	H	T	G	V	Q	T	P	E	W	K	P	R	L	V	W	S	C	L	G	L	Y	I	V	F	L	T	A	L	E	F	K	Q	E	L	W	G	L	V	I	V	A	A	G	F	A
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		V	P	V	.	I	T	V	I	S	T	F	G	L	V	F	A	S	V	Y	S	L	A	M	L	H	R	A	Y	F	G	K	A	K	S	Q	I	A	S	Q	E	L	P	G	M	S	L	R	E	L	F	M	I	L	L	L	V	V	L	L	V	L	L	G	F	Y	P	Q	P	I	L	D	T	S	H	S	A	I	G	N	I
Template Known Secondary structure					.																									S	S	S	S		S	S	T	T		S	S
Template Predicted Secondary structure					.
Template SS confidence
		418	.	420		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
		235	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	Q	W
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		497	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions