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Job DescriptionP75788
Confidence0.96%DateThu Jan 5 12:14:09 GMT 2012
Rank29Aligned Residues254
% Identity9%Templatec2gfpA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   51........60.........70......... 80.........90.........100.........110.........120.........
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Query Sequence  LMLLTKGVELSGYFDVLGRKMVRRFATER. RLAMFMVLAAALLSTFLTNDVALFIVVPLTITLKRLCEIPVNRLIIFEAL
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Template Sequence  QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLY
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   46...50.........60.........70.........80.........90.........100.........110.........120.....
 
   130........ .140.........150.........160.........170.........180.........190.........200......
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Query Sequence  AVNAGSLLT. . . PIGNPQNILIWGRSGLSFAGFIAQMAPLAGAMMLTLLLLCWCCFPGKAMQYHTGVQTPEWKPRLVWSC
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Template Sequence  ERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFG
Template Known Secondary structure  TSS

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   126...130.........140.........150.........160.........170.........180.........190.........200.....
 
   207..210.........220.........230.........240.........250.........260.........270.........280......
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Query Sequence  LGLYIVFLTALEFKQELWGLVIVAAGFALLARRVVLSVDWTLLLVFMAMFIDVHLLTQLPALQGVLGNVSHLSEPGLWLT
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Template Sequence  NSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAG
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   206...210.........220.........230.........240.........250.........260.........270.........280.....
 
   287..290.........300....
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Query Sequence  AIGLSQVISNVPSTILLL
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Template Sequence  LLMWIPDWFGVMNVWTLL
Template Known Secondary structure  SSSS
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   286...290.........300...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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