Job Description P75822 Confidence 99.98% Date Thu Jan 5 12:14:36 GMT 2012 Rank 41 Aligned Residues 276 % Identity 13% Template c1n7gB_ PDB info PDB header:lyase Chain: B: PDB Molecule:gdp-d-mannose-4,6-dehydratase; PDBTitle: crystal structure of the gdp-mannose 4,6-dehydratase2 ternary complex with nadph and gdp-rhamnose. Resolution 2.20 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40								.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.																										.	.
Query SS confidence																																								.	.	.	.	.	.	.																										.	.
Query Sequence		Q	R	I	L	V	L	G	A	S	G	Y	I	G	Q	H	L	V	R	T	L	S	Q	Q	G	H	Q	I	L	A	A	A	R	H	V	D	R	L	A	.	.	.	.	.	.	.	K	L	Q	L	A	N	V	S	C	H	K	V	D	L	S	W	P	D	N	L	P	A	L	L	Q	.	.	D	I	D	T	V	Y	F	L
Query Conservation																																								.	.	.	.	.	.	.																										.	.
Alig confidence																																								.	.	.	.	.	.	.																										.	.
Template Conservation
Template Sequence		K	I	A	L	I	T	G	I	T	G	Q	D	G	S	Y	L	T	E	F	L	L	G	K	G	Y	E	V	H	G	L	I	R	R	S	S	N	F	N	T	Q	R	I	N	H	I	Y	I	D	K	A	L	M	K	L	H	Y	A	D	L	T	D	A	S	S	L	R	R	W	I	D	V	I	K	P	D	E	V	Y	N	L
Template Known Secondary structure								T	T	T	S												T	T	T											S	S				T	T	T									S								T	T															S
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		74	.	.	.	.	.	80							.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.																		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure									.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	H	S	M	G	E	G	.	.	.	.	.	.	G	D	F	I	A	Q	E	R	Q	V	A	L	N	V	R	D	A	L	R	E	V	P	V	K	Q	L	I	F	L	S	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	P	P	H	E	Q	S	D	H	L	R	A	R	Q	A	T	A
Query Conservation									.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	Q	S	H	V	A	V	S	F	E	I	P	D	Y	T	A	D	V	V	A	T	G	A	L	R	L	L	E	A	V	R	S	H	T	I	D	S	G	R	T	V	K	Y	Y	Q	A	G	S	S	E	M	F	G	S	T	P	P	P	Q	S	E	T	T	P	F	H	P	R	S	P	Y	A	A	S	K	C	A	A	H
Template Known Secondary structure													S									T																													G	G	G	G	T	T	S		S	S	B		T	T	S						S
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		131	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.								.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.																							.	.	.	.	.	.	.
Query SS confidence					.	.	.	.																							.	.	.	.	.	.	.
Query Sequence		D	I	L	.	.	.	.	R	E	A	N	V	P	V	T	E	L	R	A	G	I	I	V	G	A	G	S	A	A	.	.	.	.	.	.	.	F	E	V	M	R	D	M	V	Y	N	L	P	V	L	T	P	P	R	W	V	R	S	R	T	T	P	I	A	L	E	N	L	L	H	Y	L	V	A	L	L	D	H	P	A
Query Conservation					.	.	.	.																							.	.	.	.	.	.	.
Alig confidence					.	.	.	.																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	Y	T	V	N	Y	R	E	A	Y	G	L	F	A	C	N	G	I	L	F	N	H	E	S	P	R	R	G	E	N	F	V	T	R	K	I	T	R	A	L	G	R	I	K	V	G	L	Q	T	K	L	F	L	G	N	L	Q	A	S	R	D	W	G	F	A	G	D	Y	V	E	A	M	W	L	M	L	Q	Q	E	K
Template Known Secondary structure																										T	T	S		T	T	S														T	T	S							S		S	S																					S	S	S
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	H	R	I	F	E	A	A	G	P	E	V	L	S	Y	Q	Q	Q	F	E	H	F	M	A	V	S	G	K	R	R	W	L	I	P	I	P	L	P	T	R	W	I	S	V	W	F	L	N	V	I	T	S	V	P	P	T	T	A	R	A	L	I	Q	G	L	K	H	D	L	L	A	D	D	T	A	L	R	A	L
Query Conservation
Alig confidence		.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	P	D	D	Y	V	V	A	T	E	E	G	H	T	V	E	E	F	L	D	V	S	F	G	Y	L	G	L	N	W	K	D	Y	V	E	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	R	Y	F	R	P	A	E	V	D	N	L	Q	G	D	A	S	K	A	K	E	V
Template Known Secondary structure		.	.									S																T	T			G	G	G	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	S		S	S				B			B
Template Predicted Secondary structure		.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.																					310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		I	P	Q	R	L	.	I	A	F	D	D	A	V	R	S	T	L	K	E	E	E	K
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		L	G	W	K	P	Q	V	G	F	E	K	L	V	K	M	M	V	D	E	D	L	E
Template Known Secondary structure								S
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions