PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c8i03F_

Fold library id	PDB Header	Molecule	Title
c8i03F_	3.20	PDB header: dna binding protein	Chain: F: PDB Molecule: transcriptional regulatory protein rxt2;

Links to external resources
Added to library: Sat May 6 08:56:53 2023

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K Q F E E Q I E R F K Q A L F E D D A D D S I G E A L T N R G L K R K K G S K N V Y Y G C V G N S S G S S I D I D Y Y N I G N T K R G V V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
S S
S S S S G G G
S S
T T S
B
T T
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S H F R R R I D P E W L D H D N P Y N D I N I A E I M S P L T K P Q D L L T H P A I S S I F E Q N Y L S I L A S S A L E I I S A E H K Y T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S S
G G G
T T T T
S
S S G G G G G T S T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H L E Q L M V A L L G D D P S L P G P P H E V F G I S P E Q C R E L T I T V Q E A L E K S K E F I R C W T N V R M D L L R A I R F K N K V I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
S
T T
T T

. . . . . . . . . 220 . . . .

Sequence A Y C Q G E D Y N G N T Q V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	Q	F	E	E	Q	I	E	R	F	K	Q	A	L	F	E	D	D	A	D	D	S	I	G	E	A	L	T	N	R	G	L	K	R	K	K	G	S	K	N	V	Y	Y	G	C	V	G	N	S	S	G	S	S	I	D	I	D	Y	Y	N	I	G	N	T	K	R	G	V	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																										S		S			S	S			S	S	S	S	G	G	G			S	S								T	T	S		B						T	T						B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	H	F	R	R	R	I	D	P	E	W	L	D	H	D	N	P	Y	N	D	I	N	I	A	E	I	M	S	P	L	T	K	P	Q	D	L	L	T	H	P	A	I	S	S	I	F	E	Q	N	Y	L	S	I	L	A	S	S	A	L	E	I	I	S	A	E	H	K	Y	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S					S	S			G	G	G		T	T	T	T							S				S	S	G	G	G	G	G	T	S							T	T			S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	L	E	Q	L	M	V	A	L	L	G	D	D	P	S	L	P	G	P	P	H	E	V	F	G	I	S	P	E	Q	C	R	E	L	T	I	T	V	Q	E	A	L	E	K	S	K	E	F	I	R	C	W	T	N	V	R	M	D	L	L	R	A	I	R	F	K	N	K	V	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T			T	T			S						T	T			T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Sequence	A	Y	C	Q	G	E	D	Y	N	G	N	T	Q	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	T	T				S