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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c8hyjA_

Fold library idPDB HeaderMoleculeTitle
c8hyjA_4.30PDB header: transcriptionChain: A: PDB Molecule: dna-directed rna polymerase v subunit 1;


Added to library: Sat Jun 24 09:19:09 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GITFALASHHEICIQSISESAINHPSQLTNAFLGLPLEFGKCESCGATEPDKCEGHFGYIQLPVPIYHPA
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Known secondary structure (DSSP)











S


SGGGGG
STT


SSS


SS



STTT




B

B

S



GG
 .........80.........90.........100.........110.........120.........130.........140
Sequence HVNELKQMLSLLCLKCLKIKEASQISIKDRASDGASYLELKLPSRSRLQPGCWNFLERYGYRYGSDYTRP
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Known secondary structure (DSSP) GS


S




TTS


TT



TTS


TT

S




SS

B
 .........150.........160.........170.........180.........190.........200.........210
Sequence LLAREVKEILRRIPEESRKKLTAKGHIPQEGYILEYLPVPPNCLSPSRIELKDVLKKVIAIKSSRSGETN
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Known secondary structure (DSSP)

S

T



TTSS

B

B

GGG

T

SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence FESHKAEASEMFRVVDTYLKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVHNRGYLQKLVD
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Known secondary structure (DSSP) TTSST




S




B

SS
TT




STTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence DKLCLSYTQGSTTYSLRDGSKGHTELKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRVYVHEDNTVKI
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Known secondary structure (DSSP) TT


TT
STT

S




TT

TT

SS
S
GGG


SSSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence NPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLRVMLERVFL
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Known secondary structure (DSSP)
GGGTTTS


TTT
B




STSBTTTS
B
TTTSSBS



SS
B
 .........430.........440.........450.........460.........470.........480.........490
Sequence DKATAQQLAMYGSLSLPPPALRKSSKSGPAWTVFQILQLAFPERLSCKGDRFLVDGSDLLKFDFGVDAMG
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Known secondary structure (DSSP)
TSSS


S
SB


SS

SB
BS
SS




SS

BSSS
B





SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence SIINEIVTSIFLEKGPKETLGFFDSLQPLLMESLFAEGFSLSLEDLSMSRADMDVIHNLIIREISPMVSR
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Known secondary structure (DSSP) T





TTTT


TGGGGGS
 .........570.........580.........590.........600.........610.........620.........630
Sequence LRLSYRDELQLENSIHKVKEVAANFMLKSYSIRNLIDIKSNSAITKLVQQTGFLGLQLSDKKKFYTKTLV
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Known secondary structure (DSSP) TTT
STTSSS
SS
TTTS






SS

SS
T
 .........640.........650.........660.........670.........680.........690.........700
Sequence EDMAIFCKRKYGRISSSGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLMAVLRD
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Known secondary structure (DSSP) TT
SS

TT
SS




SSS


TTSSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence IVITNDGTVRNTCSNSVIQFKYGVDSERGHQGLFEAGEPVGVLAATAMSNPAYKAVLDSSPNSNSSWELM
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Known secondary structure (DSSP)
TTSSSSTT
S
SS

SS




S

TT
B
S

 .........780.........790.........800.........810.........820.........830.........840
Sequence KEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQENAACTVRNKLNKVSLKDTAVEFLVEYRKQGIDSCL
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Known secondary structure (DSSP) TS

SS

S






SS

TTTTTB
B
B















 .........850.........860.........870.........880.........890.........900.........910
Sequence HGHIHLNKTLLQDWNISMQDIHQKCEDVINSLGQKKKKKATDDFKRTSLSVSECCSFRDPCGSKGSDMPC
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Known secondary structure (DSSP)




B


TTT


T

SSSS


TTTGGG





S





SSS







 .........920.........930.........940.........950.........960.........970.........980
Sequence LTFSYNATDPDLERTLDVLCNTVYPVLLEIVIKGDSRICSANIIWNSSDMTTWIRNRHASRRGEWVLDVT
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Known secondary structure (DSSP)




S
SSTTTTBSB
SSB





TTTT


TT


S
S



 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence VEKSAVKQSGDAWRVVIDSCLSVLHLIDTKRSIPYSVKQVQELLGLSCAFEQAVQRLSASVRMVSKGVLK
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Known secondary structure (DSSP) B
S
TTSSS



S
TTS
SSS


BSSSSSS





 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence EHIILLANNMTCSGTMLGFNSGGYKALTRSLNIKAPFTEATLIAPRKCFEKAAEKCHTDSLSTVVGSCSW
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Known secondary structure (DSSP) SSSSS


SSTT


S







STTT
 .........1130.........1140.
Sequence GKRVDVGTGSQFELLWNQKET
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Known secondary structure (DSSP)



SSGGGSS






S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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