PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c8hpoH_

Fold library id	PDB Header	Molecule	Title
c8hpoH_	2.60	PDB header: dna binding protein	Chain: H: PDB Molecule: transcriptional regulatory protein dep1;

Links to external resources
Added to library: Sat May 6 08:50:01 2023

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S P I E M E E Q R M T A L K E I T D I E Y K F A Q L R Q K L Y D N Q L V R L Q T E L Q M C L E G S H P E L Q V Y Y S K I A A I R D Y K L H R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S T T T T T S S T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A Y Q R Q K Y E L S C I N T E T I A T R T F I H Q D F H K K V T D L R A R L L N R T T Q T W Y D I N K E R R D M D I V I P D V N Y H V P I K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S S
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L D N K T L S C I T G Y A S A A Q L C Y P G E P V A E D L A C E S I E Y R Y R A N P V D K L E V I V D R M R L N N E I S D L E G L R K Y F H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T T T T T T
S S
S
S S S
B
S

. . . . . . . . . 220 . . . . . . . . . 230 . . .

Sequence S F P G A P E L N P L R D S E I N D D F H Q W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	P	I	E	M	E	E	Q	R	M	T	A	L	K	E	I	T	D	I	E	Y	K	F	A	Q	L	R	Q	K	L	Y	D	N	Q	L	V	R	L	Q	T	E	L	Q	M	C	L	E	G	S	H	P	E	L	Q	V	Y	Y	S	K	I	A	A	I	R	D	Y	K	L	H	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																														T	T	T		S	T	T	T	T	T	S	S	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	Y	Q	R	Q	K	Y	E	L	S	C	I	N	T	E	T	I	A	T	R	T	F	I	H	Q	D	F	H	K	K	V	T	D	L	R	A	R	L	L	N	R	T	T	Q	T	W	Y	D	I	N	K	E	R	R	D	M	D	I	V	I	P	D	V	N	Y	H	V	P	I	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																																							T	T	S		S	S									B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	D	N	K	T	L	S	C	I	T	G	Y	A	S	A	A	Q	L	C	Y	P	G	E	P	V	A	E	D	L	A	C	E	S	I	E	Y	R	Y	R	A	N	P	V	D	K	L	E	V	I	V	D	R	M	R	L	N	N	E	I	S	D	L	E	G	L	R	K	Y	F	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S		T	T	T	T	T	T	T										S	S										S						S	S	S			B		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Sequence	S	F	P	G	A	P	E	L	N	P	L	R	D	S	E	I	N	D	D	F	H	Q	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S