PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c8hmfD_

Fold library id	PDB Header	Molecule	Title
c8hmfD_	4.60	PDB header: protein transport	Chain: D: PDB Molecule: intraflagellar transporter;

Links to external resources
Added to library: Sat Jun 17 15:21:28 2023

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M S L F S E L P L D A G T D E Q I T Q I A V S N V S I N P S L A I I T P H K I L L F N E C G E K H D Y E L S R N I R C T Y V Q W H P S Q P I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S S
S S
S S
B
S S
S S
S S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I A L G W E T G A I T L W S E E T K V A K E E P N G H K S E I C L I Q F N P S G S R M V S A D I D G N V T V W R G I N I V S Q Y K K E Q S I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T T T T T T S
S S
S S S S T T S T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T H A I F C E L N I D S K L K S G N L F F F G G K S G V V C L A D D A N H C S D V C K V G G S I K S L L F Y E K E N S V I I I T S T L L L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T T
T T
T T S
S
S
T T T T T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence M F K I S T S V K T G P S K R V K L S I S G D P Q K L Q S I W I G S C L L A T C S H E N M L R M W H L D Q D D N Y V L T L H Q L A Q Q T Q T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
S S
B
S
S
T T T
T T T S S S S
T T T T
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence Q Q G A A T V I Q S T N T N D Q I T S I Q Y E K R G K V L V A G T R E G R I I F W K N L S I G S E S P L D V D E W K M L P Y V S V R Q G V N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T
T T T T T T T
S S S
S T T T
S S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence S I A V G Q N N G L I A V Q Y G N Q I S L V Q E T V I N G K M T D Q V R L L Q S S A N T I K I Y I N N D I S N Q V L H F Q S K G N I K G L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T
T T
S S S
S S
S S

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence C N D Q F M L L W T S K T I E I H E I I I N P K E S Q T K L V A S I Q E K C L R S V I H K E N I I L V N D M E L N V L N F K G I Q K Q N L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
S S
S T T T T
S S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence F S E S E G K I L N V N V L N N H L I M W T S N N Y I R L F D I S R R E V K Q I G V T R R F E N S Q G Q L G Q I R Y C A V N S D G S K I V I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
T T T T S
S S S S
S
S B
S S S B
S S S S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence T A D Q R G K S G P Q A D N K F Y I Y D V Q T D N F L L Y E M P A K C I P L Q P Y C D R K D R K F F G I S C I I N K N I Q Q E K N A D E N N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
S
S
T T T T
T T
S S
S S
S

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence D E N E D N K S D K S R N E D D D E K D K S N L E F Y T F F V T S E N G I R K Q D Q Y Q L E S S I E A V F A I D I P K L Y F I K R N K K T N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S S
S S
S S G G G T T T T T T T
S S T T

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence S S G Q N Y K I V E K Y L N D F V G L E K I D N Q I K E A I M N F S F Y L T M D N L D E A Y K S V K Q I Q N P S I W E K M A S M C V K T K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
T T T T T
S
S S T T
T T
T

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence I D V A E I C L G N M R F A R G S K A I R E Q K K E P E L D A Q L A M V A I Q L N M K D E A V K L Y E Q S K R Y D L Y N K M L Q A E G N W E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T
T S
S
T T
T T
T

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence K A I Q I S E N H D R I N L K N T Y Y R T A Q M Y E V S N N Y E Q A I L Y Y E K S G T H V K E V P R M L L E A G Q T E Q L E R Y I I D K N E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S T T
S S
T T T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence K P L F K W W A Q Y L E S N Y R I E L A V K F Y R Q S E D Y D Q M V R L F L T K N D V Q T A S S I C S E T N N S A A C Y I L A K Y L E M N G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T
T T
T

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence Q I P E A I Q Y Y W K S Q H Y T Q A V R L A R E K G M D N E V M S I S L Q G P N Q V K L Q S A A Y F E E K G F K Q K A V E L Y K K G G N L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T
S T T S
S S
S S

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . . . . . . . 1090 . . . . . . . . . 1100 . . . . . . . . . 1110 . . . . . . . . . 1120

Sequence K A Y N L A Q E E K L Y D E A K Q I A R Q I E Q E E D Q R N K K R D P N D L A G I I D D F I E K G Q P E R A V P L M I K A K Q F E R A I E T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
S
T T

. . . . . . . . . 1130 . . . . . . . . . 1140 . . . . . . . . . 1150 . . . . . . . . . 1160 . . . . . . . . . 1170 . . . . . . . . . 1180 . . . . . . . . . 1190

Sequence C I R F N I P I T Q D L V D K I I P T E P A K N A A E E N K R K E L M K L I A D T S I K Q G D Y R L S S K L Y T K L G N Q V E A M K C L I N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S S
S S T
T

. . . . . . . . . 1200 . . . . . . . . . 1210 . . . . . . . . . 1220 . . . . . . . . . 1230 . . . . . . . . . 1240 . . . . . . . . . 1250 . . . . . . . . . 1260

Sequence L G A I D E V V N Y A T M A R M P Q L Y I L A G N F L Q T T D W H K N P Q L M K H I I T F Y N K A K A Y D N L A G F F D A C S S V E I D E Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
S
S S
T
T

. . . . . . . . . 1270 . . . . . . . . . 1280 . . . . . . . . . 1290 . . . . . . . . . 1300 . . . . . . . . . 1310 . . . . . . . . . 1320 . . . . . . . . . 1330

Sequence R D Y E K A A A A L N E A L K H A K K S T S E S R D F R I E Q L E T K L N L V Q K F V Q A R A L F S S D P Q Q M K Q I C E D L L A Q P G I D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T T T T T
S T T G G

. . . . . . . . . 1340 . . . . . . . . . 1350 . . . . . . . . . 1360 . . . . . . . . . 1370 . . . . . . . . . 1380 . . . . . . . . . 1390 . . . . . . . . . 1400

Sequence Q S V R S G D I Y A Q I I E Y Y Y Q V K N F S Q A F D Y I K K M Q Q K R I I L A P Y L D Q E M L Q Q I L E S Q G V S L N S K N K N N D D E F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G T S
T
T T
S
T

. . . . . . .

Sequence I E E D V P E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
Disclaimer

Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	S	L	F	S	E	L	P	L	D	A	G	T	D	E	Q	I	T	Q	I	A	V	S	N	V	S	I	N	P	S	L	A	I	I	T	P	H	K	I	L	L	F	N	E	C	G	E	K	H	D	Y	E	L	S	R	N	I	R	C	T	Y	V	Q	W	H	P	S	Q	P	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S	S											S	S	S								S	S							S	S			B		S	S					S	S									S	S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	A	L	G	W	E	T	G	A	I	T	L	W	S	E	E	T	K	V	A	K	E	E	P	N	G	H	K	S	E	I	C	L	I	Q	F	N	P	S	G	S	R	M	V	S	A	D	I	D	G	N	V	T	V	W	R	G	I	N	I	V	S	Q	Y	K	K	E	Q	S	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	S							T	T	T	T						T	T	S		S	S									S	S	S	S							T	T	S							T	T									S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	H	A	I	F	C	E	L	N	I	D	S	K	L	K	S	G	N	L	F	F	F	G	G	K	S	G	V	V	C	L	A	D	D	A	N	H	C	S	D	V	C	K	V	G	G	S	I	K	S	L	L	F	Y	E	K	E	N	S	V	I	I	I	T	S	T	L	L	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	T			T	T							T	T								T	T	S								S		S									T	T	T	T							T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	M	F	K	I	S	T	S	V	K	T	G	P	S	K	R	V	K	L	S	I	S	G	D	P	Q	K	L	Q	S	I	W	I	G	S	C	L	L	A	T	C	S	H	E	N	M	L	R	M	W	H	L	D	Q	D	D	N	Y	V	L	T	L	H	Q	L	A	Q	Q	T	Q	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				B		S	S		B				S									S		T	T	T							T	T	T						S	S	S	S							T	T	T	T							S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	Q	Q	G	A	A	T	V	I	Q	S	T	N	T	N	D	Q	I	T	S	I	Q	Y	E	K	R	G	K	V	L	V	A	G	T	R	E	G	R	I	I	F	W	K	N	L	S	I	G	S	E	S	P	L	D	V	D	E	W	K	M	L	P	Y	V	S	V	R	Q	G	V	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S								T	T										T	T	T	T							T	T	T											S	S	S				S	T	T	T										S	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	S	I	A	V	G	Q	N	N	G	L	I	A	V	Q	Y	G	N	Q	I	S	L	V	Q	E	T	V	I	N	G	K	M	T	D	Q	V	R	L	L	Q	S	S	A	N	T	I	K	I	Y	I	N	N	D	I	S	N	Q	V	L	H	F	Q	S	K	G	N	I	K	G	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	T	T							T	T																T	T							S	S	S									S	S										S	S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	C	N	D	Q	F	M	L	L	W	T	S	K	T	I	E	I	H	E	I	I	I	N	P	K	E	S	Q	T	K	L	V	A	S	I	Q	E	K	C	L	R	S	V	I	H	K	E	N	I	I	L	V	N	D	M	E	L	N	V	L	N	F	K	G	I	Q	K	Q	N	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S							S	S											S	S															S						T	T							T	T							S	S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	F	S	E	S	E	G	K	I	L	N	V	N	V	L	N	N	H	L	I	M	W	T	S	N	N	Y	I	R	L	F	D	I	S	R	R	E	V	K	Q	I	G	V	T	R	R	F	E	N	S	Q	G	Q	L	G	Q	I	R	Y	C	A	V	N	S	D	G	S	K	I	V	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	T	T										T	T							T	T	S								S	S	S	S					S					S	B		S	S	S	B											S	S	S	S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	T	A	D	Q	R	G	K	S	G	P	Q	A	D	N	K	F	Y	I	Y	D	V	Q	T	D	N	F	L	L	Y	E	M	P	A	K	C	I	P	L	Q	P	Y	C	D	R	K	D	R	K	F	F	G	I	S	C	I	I	N	K	N	I	Q	Q	E	K	N	A	D	E	N	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S		S		S		S							T	T	T	T									T	T										S	S		S	S																						S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	D	E	N	E	D	N	K	S	D	K	S	R	N	E	D	D	D	E	K	D	K	S	N	L	E	F	Y	T	F	F	V	T	S	E	N	G	I	R	K	Q	D	Q	Y	Q	L	E	S	S	I	E	A	V	F	A	I	D	I	P	K	L	Y	F	I	K	R	N	K	K	T	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S						S	S		S	S		S	S	G	G	G	T	T													T	T	T												T	T									S	S									T	T
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	S	S	G	Q	N	Y	K	I	V	E	K	Y	L	N	D	F	V	G	L	E	K	I	D	N	Q	I	K	E	A	I	M	N	F	S	F	Y	L	T	M	D	N	L	D	E	A	Y	K	S	V	K	Q	I	Q	N	P	S	I	W	E	K	M	A	S	M	C	V	K	T	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S											T	T	T	T	T			S			S	S														T	T											T	T																	T
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	I	D	V	A	E	I	C	L	G	N	M	R	F	A	R	G	S	K	A	I	R	E	Q	K	K	E	P	E	L	D	A	Q	L	A	M	V	A	I	Q	L	N	M	K	D	E	A	V	K	L	Y	E	Q	S	K	R	Y	D	L	Y	N	K	M	L	Q	A	E	G	N	W	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S											T												T	S		S													T	T												T	T													T
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	K	A	I	Q	I	S	E	N	H	D	R	I	N	L	K	N	T	Y	Y	R	T	A	Q	M	Y	E	V	S	N	N	Y	E	Q	A	I	L	Y	Y	E	K	S	G	T	H	V	K	E	V	P	R	M	L	L	E	A	G	Q	T	E	Q	L	E	R	Y	I	I	D	K	N	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	S	S	S															T	T												S	S			T	T										T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	K	P	L	F	K	W	W	A	Q	Y	L	E	S	N	Y	R	I	E	L	A	V	K	F	Y	R	Q	S	E	D	Y	D	Q	M	V	R	L	F	L	T	K	N	D	V	Q	T	A	S	S	I	C	S	E	T	N	N	S	A	A	C	Y	I	L	A	K	Y	L	E	M	N	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T													T												T	T																													T
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	Q	I	P	E	A	I	Q	Y	Y	W	K	S	Q	H	Y	T	Q	A	V	R	L	A	R	E	K	G	M	D	N	E	V	M	S	I	S	L	Q	G	P	N	Q	V	K	L	Q	S	A	A	Y	F	E	E	K	G	F	K	Q	K	A	V	E	L	Y	K	K	G	G	N	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T													T		S								T	T	S															S	S												S	S
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Sequence	K	A	Y	N	L	A	Q	E	E	K	L	Y	D	E	A	K	Q	I	A	R	Q	I	E	Q	E	E	D	Q	R	N	K	K	R	D	P	N	D	L	A	G	I	I	D	D	F	I	E	K	G	Q	P	E	R	A	V	P	L	M	I	K	A	K	Q	F	E	R	A	I	E	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T		S																						S																											T	T
	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
Sequence	C	I	R	F	N	I	P	I	T	Q	D	L	V	D	K	I	I	P	T	E	P	A	K	N	A	A	E	E	N	K	R	K	E	L	M	K	L	I	A	D	T	S	I	K	Q	G	D	Y	R	L	S	S	K	L	Y	T	K	L	G	N	Q	V	E	A	M	K	C	L	I	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T												S		S	S			S	S																						T													T
	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260
Sequence	L	G	A	I	D	E	V	V	N	Y	A	T	M	A	R	M	P	Q	L	Y	I	L	A	G	N	F	L	Q	T	T	D	W	H	K	N	P	Q	L	M	K	H	I	I	T	F	Y	N	K	A	K	A	Y	D	N	L	A	G	F	F	D	A	C	S	S	V	E	I	D	E	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T		S																										S			S	S																T																				T
	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330
Sequence	R	D	Y	E	K	A	A	A	A	L	N	E	A	L	K	H	A	K	K	S	T	S	E	S	R	D	F	R	I	E	Q	L	E	T	K	L	N	L	V	Q	K	F	V	Q	A	R	A	L	F	S	S	D	P	Q	Q	M	K	Q	I	C	E	D	L	L	A	Q	P	G	I	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T				T	T																								T	T	T	T															S	T	T	G	G
	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400
Sequence	Q	S	V	R	S	G	D	I	Y	A	Q	I	I	E	Y	Y	Y	Q	V	K	N	F	S	Q	A	F	D	Y	I	K	K	M	Q	Q	K	R	I	I	L	A	P	Y	L	D	Q	E	M	L	Q	Q	I	L	E	S	Q	G	V	S	L	N	S	K	N	K	N	N	D	D	E	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	T	S																	T															T	T							S													T
	.	.	.	.	.	.	.
Sequence	I	E	E	D	V	P	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T