PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c8himE_

Fold library id	PDB Header	Molecule	Title
c8himE_	2.80	PDB header: transcription	Chain: E: PDB Molecule: dna-directed rna polymerases i, ii, and iii subunit rpabc1;

Links to external resources
Added to library: Sat Mar 25 10:44:42 2023

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L S K Y V D P S S E E S H R Y Y L A R R N A L E M L R D R G Y E V S L E D I N L S L Q D F R T V Y G E R P D V D R L R I S A H H R S D S S N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S T
T T S S S
S
S S
S S S
B
S S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K V K V V F F G T G K V K V N T I R S V A A E I L S Q E T I T G L I L V L Q N Q V T D K A L K A I E L F T F K V E I F Q I T D L L V N L T K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
S S
S
S
S S
T T T T S S S
T T T S S S
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . .

Sequence H V L S L R H R V L T D G E K K A L L K Q F N I E E K Q L P R I S K K D A V V R Y Y G L E K G Q I V K V S Y R G E L T E S Y V A Y R C V W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T
T
S S S S
S S S T
T T
S T T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
Disclaimer

Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	S	K	Y	V	D	P	S	S	E	E	S	H	R	Y	Y	L	A	R	R	N	A	L	E	M	L	R	D	R	G	Y	E	V	S	L	E	D	I	N	L	S	L	Q	D	F	R	T	V	Y	G	E	R	P	D	V	D	R	L	R	I	S	A	H	H	R	S	D	S	S	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T					S		S																				T					T	T	S	S	S			S									S	S			S	S	S						B		S	S		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	V	K	V	V	F	F	G	T	G	K	V	K	V	N	T	I	R	S	V	A	A	E	I	L	S	Q	E	T	I	T	G	L	I	L	V	L	Q	N	Q	V	T	D	K	A	L	K	A	I	E	L	F	T	F	K	V	E	I	F	Q	I	T	D	L	L	V	N	L	T	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B								S	S																		S			S							S	S									T	T	T	T	S	S	S							T	T	T	S	S	S		T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Sequence	H	V	L	S	L	R	H	R	V	L	T	D	G	E	K	K	A	L	L	K	Q	F	N	I	E	E	K	Q	L	P	R	I	S	K	K	D	A	V	V	R	Y	Y	G	L	E	K	G	Q	I	V	K	V	S	Y	R	G	E	L	T	E	S	Y	V	A	Y	R	C	V	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	T	T																				T			S	S	S	S					S	S	S							T			T	T									S	T	T	T	T	T