PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c8gzhA_

Fold library id	PDB Header	Molecule	Title
c8gzhA_	2.96	PDB header: transcription/dna/rna	Chain: A: PDB Molecule: dna-directed rna polymerase subunit alpha;

Links to external resources
Added to library: Sat Apr 22 11:29:55 2023

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence F Q I E C V E S S T R K N Q Q Q Y S K F S L E P L D R G Q G T T V G N A L R R V L L S N L P G A A V T A I R I A G V N H E F A T I L G V R E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S S S
T T S
T T
S T T
T T B S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D V L E I M L N M K E L V L K S Y T D Q P Q I G R L T A I G P G T V T A A Q F E V P S E V E V I D P N Q Y I A T L A E G A K L E M E F R V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S S S S
S S G G G
B
S S S
T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R G V G Y R V I E R G L D F L Q I D S V F M P V T K V N Y T V E D I R A D G M S P K D R L I L D I W T N G S I Q P R E A L S E A S D I I A N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
S S S

. . . . . . . . .

Sequence L F I P L K D L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	F	Q	I	E	C	V	E	S	S	T	R	K	N	Q	Q	Q	Y	S	K	F	S	L	E	P	L	D	R	G	Q	G	T	T	V	G	N	A	L	R	R	V	L	L	S	N	L	P	G	A	A	V	T	A	I	R	I	A	G	V	N	H	E	F	A	T	I	L	G	V	R	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										B		S	S	S													T	T																S												T	T			S	T	T				T	T	B	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	V	L	E	I	M	L	N	M	K	E	L	V	L	K	S	Y	T	D	Q	P	Q	I	G	R	L	T	A	I	G	P	G	T	V	T	A	A	Q	F	E	V	P	S	E	V	E	V	I	D	P	N	Q	Y	I	A	T	L	A	E	G	A	K	L	E	M	E	F	R	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T						S	S	S	S										S	S					G	G	G		B			S	S				S		T	T								T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	G	V	G	Y	R	V	I	E	R	G	L	D	F	L	Q	I	D	S	V	F	M	P	V	T	K	V	N	Y	T	V	E	D	I	R	A	D	G	M	S	P	K	D	R	L	I	L	D	I	W	T	N	G	S	I	Q	P	R	E	A	L	S	E	A	S	D	I	I	A	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																				S	S		S	S													S	S	S
	.	.	.	.	.	.	.	.	.
Sequence	L	F	I	P	L	K	D	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)