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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c8gnaA_

Fold library idPDB HeaderMoleculeTitle
c8gnaA_2.80PDB header: rna binding proteinChain: A: PDB Molecule: ramp superfamily protein;


Added to library: Sat Jan 21 12:46:19 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MNITVELTFFEPYRLVEWFDWDARKKSHSAMRGQAFAQWTWKGRTAGKSFITGTLVRSAVIKAVEELLSL
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Known secondary structure (DSSP)
SS

B


TTTTTT
TTTS




S

 .........80.........90.........100.........110.........120.........130.........140
Sequence NNGKWEGVPCCNGSFQTDKKPSFLRKRHTLQWQANICDKEEACPFCILLGRFDNAGKERNKDYDIHFSNF
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Known secondary structure (DSSP) TTSTT











SS


S







SSS

TTTSS




SS

S

 .........150.........160.........170.........180.........190.........200.........210
Sequence DLDDLRLVDIASGRILNRVDFDTGKAKDYFRTWEADYETYGTYTGRITLRNEHAKKLLLASLGFVDKLCG
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Known secondary structure (DSSP)



B




SSSSS


BB
TTTS

S
GGG

TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence ALCRIEVIHNDELRKQAEVIVEAFKQNDKLEKIRILADAIRTLRLHGEGVIEKDELPDGKEERDKGHHLW
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Known secondary structure (DSSP)


T
TTSTTTS
TTT
S



TTTSS

TTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence DIKVQGTALRTKLKELWQSNKDIGWRKFTEMLGSNLYLIYKKETSDLFIPVTPPEGIETKEWIIVGRLKA
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Known secondary structure (DSSP) S

BTTB
S
TT
T







TT


 .........360.........370.........380.........390.........400.........410.........420
Sequence ATPFYFGVQQPSDSIPGEHASFNILLDKENRYRIPRSALRGALRRDLRTAFGSGCNVSLGGQILCNCKVC
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Known secondary structure (DSSP) SS





TTTS




SSB
B
TTS
B
S





SS
SS


S
 .........430.........440.........450.........460.........470.........480.........490
Sequence IEMRRITLKDSVSDFSEPPEIRYRIAKNPGTATVEDGSLFDIEVGPEGLTFPFVLRYRGHKFPEQLSSVI
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Known secondary structure (DSSP)


S





TTTSS

BT

SS

 .........500.........510.........520.........530.........540.........550.........560
Sequence RYWEENDGKNGMAWLGGLDSTGKGRFALKDIKIFEWDLNQKINEYIKERGMRGKEKELLEMLPDGLIPYK
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Known secondary structure (DSSP) B

TTT



SS
GGGT


TTT

TGGG
S



TT

B

 .........570.........580.........590.........600.........610.........620.........630
Sequence FFEERECLFPYKENLKPQWSEVQYTIEVGSPLLTADTISALTEPGNRAAIAYKKRVYNDGNNAIEPEPRF
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Known secondary structure (DSSP)



GGG
TGGG
S





TTSTT

S

B

BB
TTT
SB
SS

B
 .........640.........650.........660.........670.........680.........690.........700
Sequence AVKSETHRGIFRTAVGRRTGDLGKEDHEDCTCDMCIIFGNEHESSKIRFEDLELINGNEFEKLEKHIDHV
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Known secondary structure (DSSP)
S
TT
S


S

S

TTS

S

S

TT
SSSB

 .........710.........720.........730.........740.........750.........760.........770
Sequence AIDRFTGGALDKAKFDTYPLAGSPKKPLKLKGRFWIKKGFSGDHKLLITTALSDIRDGLYPLGSKGGVGY
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Known secondary structure (DSSP)
TTTSS
B

BTTB
TT

TSS
SSS
TTTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence GWVAGISIDDNVPDDFKEMIINNDYVHPGHQSPKQDNIYYPHYFLDSGSKVYREKDIITHEEFTEELLSG
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Known secondary structure (DSSP) S

TTS
TT





B


SSSGGG


S


S





S


SSS

SSSB
 .........850.........860.........870.........880.........890.........900.........910
Sequence KINCKLETLTPLIIPDTSDENGLKLQGNKPGHKNYKFFNINGELMIPGSELRGMLRTHFEALTKSCFAIF
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Known secondary structure (DSSP) SS



TT
TBTTS
TTTSTT

BB
TT
B
T


SS
 .........920.........930.........940.........950.........960.........970.........980
Sequence GEDSTLKTLGGKLDKALHPCTGLSDGLCPGCHLFGTTDYKGRVKFGFAKYENGPEWLITRGNNPERSLTL
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Known secondary structure (DSSP)
TT
B

BSGGGSTTTSS


SGGG


T
BTTB

S

BB

SS

B


SSSSSSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence GVLESPRPAFSIPDDESEIPGRKFYLHHNGWRIIRQKQLEIRETVQPERNVTTEVMDKGNVFSFDVRFEN
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Known secondary structure (DSSP)








STT








TTSTTTSSSS
TTT


B
TT
S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LREWELGLLLQSLDPGKNIAHKLGKGKPYGFGSVKIKIDSLHTFKIKRVPQSDIREYINKGYQKLIEWLP
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Known secondary structure (DSSP) B



BTB

STTTTTT





TTT


 .........1130.........1140.........1150.........1160.........1170.........1180........
Sequence QWHVIPHIDKLYKLLWVPFLLEPDVRYPVLNEESKGDYTYKKLGDKDNLPYKTRVKGLTTPWSPWNPF
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Known secondary structure (DSSP)
GGGSB
TT






SSSS



TTTT
TTTS
STBS
TT
BSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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