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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c8foh1_

Fold library idPDB HeaderMoleculeTitle
c8foh1_4.93PDB header: dna binding proteinChain: 1: PDB Molecule: dna polymerase;


Added to library: Sat Jun 3 16:49:54 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TFQMFWLDYCEVNNTLILFGKVCVSAMVQINGLCRELFFLPREGKTPTDIHEEIIPLLMDKYGLDNIRAK
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Known secondary structure (DSSP)

TT






TT

T
S


 .........80.........90.........100.........110.........120.........130.........140
Sequence PQKMKYSFELPDIPSESDYLKVLLPYRDTIPSDLSSDTFYHVFGGNSNIFESFVIQNRIMGPCWLDIRNA
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Known secondary structure (DSSP)

SS
TT

S





TT


SSSSS

TT

SS




 .........150.........160.........170.........180.........190.........200.........210
Sequence SHCAVEVSVDKPQNITPTTTKTMPNLRCLSLSIQTLMNPKENKQEIVSITLSAYRNISLDSPIPENIKPD
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Known secondary structure (DSSP) BSSSS
GGG








TTTT
TTS


TT


S
 .........220.........230.........240.........250.........260.........270.........280
Sequence DLCTLVRPPQPGRVRLFNNEKAMLSCFCAMLKVEDPDVIIGHRLQNVYLDVLAHRMHDLNIPTFSSIGRR
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Known secondary structure (DSSP)






SS

SSSTTTTTT
TTGGGGSSB
 .........290.........300.........310.........320.........330.........340.........350
Sequence LRRTWPEKFGRGNSNMNHFFISDICSGRLICDIANEMGQSLTPKCQSWDLSEMYQVTCEKEHKPLDIDYQ
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Known secondary structure (DSSP)

SS

TTTTSS
TTSTTST
TT
SS











TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence NPQYQNDVNSMTMALQENITNCMISAEVSYRIQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFS
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Known secondary structure (DSSP) ST
TTTS
T
SSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence RNGFIVPDKVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVDRNKEDIDELPSVVLPRLLANLVDR
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Known secondary structure (DSSP) TTB





B




S

TTTT

TTT



SS
TTS




 .........500.........510.........520.........530.........540.........550.........560
Sequence RREVKKVMKTETDPHKRVQCDIRQQALKLTANSMYGCLGYVSRFYAKPLAMLVTNKGREILMNTRQLAES
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Known secondary structure (DSSP)


TTS


TT

 .........570.........580.........590.........600.........610.........620.........630
Sequence MNLLVVYGDTDSVMIDTGCDNYADAIKIGLGFKRLVNERYRLLEIDIDNVFKKLLLHAKKKYAALTVNLD
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Known secondary structure (DSSP) TT

SS


SSSTT


TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence KNGNGTTVLEVKGLDMKRRECPLSRDVSIHVLNTILEALQEVYDYLEDIRIKVETNNPQYYLEKQIFAPV
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Known secondary structure (DSSP) TTS
SSGGGS




TT

TTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence ERLLFNVVRLSEALGERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQLTSQ
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Known secondary structure (DSSP)


T


TTTT



TTT


SSS

SSTTTTT

B

 .........780.........790.........800.........810.........820.........830.........840
Sequence IEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSVFGKRCLNDGCTGVMRYKYSDKQLYNQLLYFDSLFDCE
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Known secondary structure (DSSP)

S
TTT

S


SSTTB
SSTT


BSS
T
 .........850.........860.........870.........880.........890...
Sequence KNKKQELKPIYLPDDLDYPKEQLTESSIKALTEQNRELMETGRSVVQKYLNDC
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Known secondary structure (DSSP) TT
S

SS
TTSTT

SS


TTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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