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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c8foe1_

Fold library idPDB HeaderMoleculeTitle
c8foe1_5.60PDB header: dna binding proteinChain: 1: PDB Molecule: dna polymerase;


Added to library: Sat Jun 3 17:34:43 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TDTFQMFWLDYCEVNNTLILFGKVKLKDDNCVSAMVQINGLCRELFFLPREGKTPTDIHEEIIPLLMDKY
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Known secondary structure (DSSP)

STT
TTS




TT

 .........80.........90.........100.........110.........120.........130.........140
Sequence GLDNIRAKPQKMKYSFELPDIPSESDYLKVLLPYQTPKSSRDTIPSDLSSDTFYHVFGGNSNIFESFVIQ
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Known secondary structure (DSSP) T
S




SS
TTS
SSS
SS
TT



TT


SSSTT

 .........150.........160.........170.........180.........190.........200.........210
Sequence NRIMGPCWLDIKGADFNSIRNASHCAVEVSVDKPQNITPTTTKTMPNLRCLSLSIQTLMNKQEIVSITLS
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Known secondary structure (DSSP) TT

SS

S
BSSS

S
BSSSS
GGG









 .........220.........230.........240.........250.........260.........270.........280
Sequence AYRNISLDSPIPENIKPDDLCTLVRPPQSTSPGRVRLFNNEKAMLSCFCAMLKVEDPDVIIGHRLQNVYL
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Known secondary structure (DSSP)
TTS


TT


S

SSS




SS

SSSTTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence DVLAHRMHDLNIPTFSSIGRRLRRTWPEKFGNMNHFFISDICSGRLICDIANEMGQSLTPKCQSWDLSEM
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Known secondary structure (DSSP) TT
TTGGGGSSB

SS

TT


TTSTTST
TT
SS

 .........360.........370.........380.........390.........400.........410.........420
Sequence YQVTCEKEHKPLDIDYQNPQYQNDVNSMTMALQENITNCMISAEVSYRIQLLTLTKQLTNLAGNAWAQTL
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Known secondary structure (DSSP)









TTST
TTTS
 .........430.........440.........450.........460.........470.........480.........490
Sequence GGTRAGRNEYILLHEFSRNGFIVPDKYVLVMDFNSLYPSIIQEFNICFTTQGVLPRLLANLVDRRREVKK
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Known secondary structure (DSSP) S
TTB






TTTT

TT


 .........500.........510.........520.........530.........540.........550.........560
Sequence VMKTETDPHKRVQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMNLLV
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Known secondary structure (DSSP)


TTTSTT
TT

TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence VYGDTDSVMIDTGCDNYADAIKIGLGFKRLVNERYRLLEIDIDNVFKKLLLHAKKKYAALTVNDVERFKD
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Known secondary structure (DSSP)
SS


SS
TT


TT


TTTTTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence TVTLELSCPCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQLTSQIEHSIRAHISLYYAGWLQCDD
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Known secondary structure (DSSP)








SSS

SSTTTTT

B



S
 .........710.........720.........730.........740.........750.........760.........770
Sequence STCGIVTRQVSVFGKRCLNDGCTGVMRYKYSDKQLYNQLLYFDSLFDCEKNKKQELKPIYLPDDLDYPES
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Known secondary structure (DSSP) TTT

S


SSTTB
SSTT


BSS
T
TT
S

SS
TTSTT


 .........780.........790.......
Sequence SIKALTEQNRELMETGRSVVQKYLNDC
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Known secondary structure (DSSP) TTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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