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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c8fod1_

Fold library idPDB HeaderMoleculeTitle
c8fod1_3.80PDB header: dna binding proteinChain: 1: PDB Molecule: dna polymerase;


Added to library: Sat Jun 3 16:49:10 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TFQMFWLDYCEVNNTLILFGKVKCVSAMVQINGLCRELFFLPREGKTPTDIHEEIIPLLMDKYGLDNIRA
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Known secondary structure (DSSP)
TT





TT

T
S


 .........80.........90.........100.........110.........120.........130.........140
Sequence KPQKMKYSFELPDIPSESDYLKVLLPYQTPKSSRDTIPSDLSSDTFYHVFGGNSNIFESFVIQNRIMGPC
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Known secondary structure (DSSP)

SS
TTS
SS

SS
SS



TT


SS
TT

TT

SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence WLDIKGADFNSIRNASHCAVEVSVDKPQNITPTTTKTMPNLRCLSLSIQTLMNPKENKQEIVSITLSAYR
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Known secondary structure (DSSP)
S
BSSS

S
BSSSS
GGG







TTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence NISLDSPIPENIKPDDLCTLVRPPQSTSFPLGLAALAKQKLPGRVRLFNNEKAMLSCFCAMLKVEDPDVI
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Known secondary structure (DSSP)
TTS


SS


S

SSSSS

TT
SS
SS

S
 .........290.........300.........310.........320.........330.........340.........350
Sequence IGHRLQNVYLDVLAHRMHDLNIPTFSSIGRRLRRTWPEKFNMNHFFISDICSGRLICDIANEMGQSLTPK
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Known secondary structure (DSSP) TTTTTTT
TTGGGGSSB

SS

TT

TTTSSSST
TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence CQSWDLSEMYQVTCEKEHKPLDIDYQNPQYQNDVNSMTMALQENITNCMISAEVSYRIQLLTLTKQLTNL
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Known secondary structure (DSSP)
SS











TTSGGGGT
TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence AGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPDKEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVD
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Known secondary structure (DSSP)
S
TS
TTTB









S

TTSTT
STTT

 .........500.........510.........520.........530.........540.........550.........560
Sequence RNKEDIDELPSVPPSEVDQGVLPRLLANLVDRRREVKKVMKTETDPHKRVQCDIRQQALKLTANSMYGCL
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Known secondary structure (DSSP)

SSSSSS





TTS


S

SGGGGT
 .........570.........580.........590.........600.........610.........620.........630
Sequence GYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMNLLVVYGDTDSVMIDTGCDNYADAIKIGLGFKRLVN
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Known secondary structure (DSSP) SSTT
TT

TT

SS



S
 .........640.........650.........660.........670.........680.........690.........700
Sequence ERYRLLEIDIDNVFKKLLLHAKKKYAALTVNEVKGLDMKRREFCPLSRDVSIHVLNTILSDKDPEEALQE
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Known secondary structure (DSSP) STT



TT



SS
S

SSS
TSSS
TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence VYDYLEDIRIKVETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQVALRMRKAGSVITFVITKLSVAERA
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Known secondary structure (DSSP) T
S
GGGG

SS
GGG
TTTTSS

TT
B


TTTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence HALNEVMIKSNNLIPDPQYYLEKQIFAPVERLLEDVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVS
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Known secondary structure (DSSP)
GGGT

B
TTTT

TTGGGG



TTT


SSS

SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence YNGLQCKHCEQLFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSVFGKRCLNDGCTGVMRY
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Known secondary structure (DSSP) SSSTTT

B



SSTTT





SSTTB
SSTT


B
 .........920.........930.........940.........950.........960.........970.........980
Sequence KYSDKQLYNQLLYFDSLFDCEKNKKQELKPIYLPDDLDYPKEQLTESSIKALTEQNRELMETGRSVVQKY
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Known secondary structure (DSSP) SS
TT
TT



S

TTSTT

SS


T
 ...
Sequence LND
Predicted secondary structure

SS confidence


Known secondary structure (DSSP) T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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