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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c8fdtA_

Fold library idPDB HeaderMoleculeTitle
c8fdtA_3.20PDB header: motor proteinChain: A: PDB Molecule: cytoplasmic dynein 1 heavy chain 1;


Added to library: Sat Jun 24 09:57:16 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RWVYLEGIFTGSADIKHLLPVETQRFQLLGKIQKALGEYLERERSSFPRFYFVGDEDLLEIIGNSKNVAK
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Known secondary structure (DSSP)
TSS
SGGGGSST

SGGGGSS
TSS

GG
 .........80.........90.........100.........110.........120.........130.........140
Sequence LQKHFKKMFAGVSSIILNEDNSVVLGISSREGEEVMFKTPVSITEHPKINEWLTLVEKEMRVTLAKLLAE
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Known secondary structure (DSSP) GTTTSSS
TTS
TTS
TTTS
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence SVTEVEIFGKATSIDPNTYITWIDKYQAQLVVLSAQIAWSENVETALSSMGGGGDAAPLHSVLSNVEVTL
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Known secondary structure (DSSP) T
SS

S
TT
SS

T
 .........220.........230.........240.........250.........260.........270.........280
Sequence NVLADSVLMEQPPLRRRKLEHLITELVHQRDVTRSLIKSKIDNAKSFEWLSQMRFYFDPKQTDVLQQLSI
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Known secondary structure (DSSP) S


T

STTSSS
B

B
TTS
TTT

B

 .........290.........300.........310.........320.........330.........340.........350
Sequence QMANAKFNYGFEYLGVQDKLVQTPLTDRCYLTMTQALEARLGGSPFGPAGTGKTESVKALGHQLGRFVLV
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Known secondary structure (DSSP) TT








S






TT
SSSSSSSTT

 .........360.........370.........380.........390.........400.........410.........420
Sequence FNCDETFDFQAMGRIFVGLCQVGAWGCFDEFNRLEERMLSAVSQQVQCIQEALREHSNPITCELLNKQVK
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Known secondary structure (DSSP)

TT



SGGGS


SSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence VSPDMAIFITMNPGYAGRSNLPDNLKKLFRSLAMTKPDRQLIAQVMLYSQGFRTAEVLANKIVPFFKLCD
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Known secondary structure (DSSP)
TT

B
TT
TT




TT

S

T
TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence EQLSSQSHYDFGLRALKSVLVSAGNVKRERIQKIKREIAENLPEQEILIQSVCETMVPKLVAEDIPLLFS
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Known secondary structure (DSSP) S


TT


S






TGGG

TTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence LLSDVFPGVQYHRGEMTALREELKKVCQEMYLTYGDGEEVGGMWVEKVLQLYQITQINHGLMMVGPSGSG
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Known secondary structure (DSSP) STT







TT




TTSTT
S

SSSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence KSMAWRVLLKALERLEGVEGVAHIIDPKAISKDHLYGTLDPNTREWTDGLFTHVLRKIIDSVRGELQKRQ
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Known secondary structure (DSSP) T





TTTS

TTT


S
TTSGGGS
 .........710.........720.........730.........740.........750.........760.........770
Sequence WIVFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNVRIMFEVQDLKYATLATVSRCGMVWFSEDVL
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Known secondary structure (DSSP)
S


TTTGGGGTTTSSTT

TTS


TTS

TT

SS

TTTS
 .........780.........790.........800.........810.........820.........830.........840
Sequence STDMIFNNFLARLRSIPLSPMLQIQRDAATIMQPYFTSNGLVTKALEHAFQLEHIMDLTRLRCLGSLFSM
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Known secondary structure (DSSP)
SSS


GGGG
TTSS

SS


 .........850.........860.........870.........880.........890.........900.........910
Sequence LHQACRNVAQYNANHPDFPMQIEQLERYIQRYLVYAILWSLSGDSRLKMRAELGEYIRRITTVPLPTAPN
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Known secondary structure (DSSP)
SSS


STTS
T

S




SS
 .........920.........930.........940.........950.........960.........970.........980
Sequence IPIIDYEVSISGEWSPWQAKVPQIEVETHKVAAPDVVVPTLDTVRHEALLYTWLAEHKPLVLCGPPGSGK
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Known secondary structure (DSSP) S
GGGB


TTS


BSTTS






SSSTT
TT




TT



TTSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence TMTLFSALRALPDMEVVGLNFSSATTPELLLKTFDHYCEYRRTPNGVVLAPVQLGKWLVLFCDEINLPDM
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Known secondary structure (DSSP) STT

TT



B


SSSB
SSTT
STT
S
B
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence DKYGTQRVISFIRQMVEHGGFYRTSDQTWVKLERIQFVGACNPPTDPGRKPLSHRFLRHVPVVYVDYPGP
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Known secondary structure (DSSP)
TTS
BSS
TTT

SS


TTSTT




TTS





 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence ASLTQIYGTFNRAMLRLIPSLRTYAEPLTAAMVEFYTMSQERFTQDTQPHYIYSPREMTRWVRGIFEALR
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Known secondary structure (DSSP) GGGSTTSGGGS
TTT
TT



TS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence PLETLPVEGLIRIWAHEALRLFQDRLVEDEERRWTDENIDTVALKHFPNIDREKAMSRPILYSNWLSKDY
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Known secondary structure (DSSP) S




SSS

S
SSS


SS

SSSSSS
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence IPVDQEELRDYVKARLKVFYEEELDVPLVLFNEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVA
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Known secondary structure (DSSP)

S







STT


TTSS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence WMNGLSVYQIKVHRKYTGEDFDEDLRTVLRRSGCKNEKIAFIMDESNVLDSGFLERMNTLLANGEVPGLF
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Known secondary structure (DSSP) TT






SS

SSS



TTT

SSS
TTSS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence EGDEYATLMTQCKEGAQKEGLMLDSHEELYKWFTSQVIRNLHVVFTMNPSSEGLKDRAATSPALFNRCVL
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Known secondary structure (DSSP)
TT



ST



TT
TTS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence NWFGDWSTEALYQVGKEFTSKMDLEKPNYIVPDYMPVVYDKLPQPPSHREAIVNSCVFVHQTLHQANARL
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Known secondary structure (DSSP) S

TTSS



TT



SS



STT

SS

 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence AKRGGRTMAITPRHYLDFINHYANLFHEKRSELEEQQMHLNVGLRKIKETVDQVEELRRKVNRSTALLKS
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Known secondary structure (DSSP) TSS








 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence LSAERERWEKTSETFKNQMSTIAGDCLLSAAFIAYAGYFDQQMRQNLFTTWSHHLQQANIQFRTDIARTE
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Known secondary structure (DSSP) TTTTSS
TT




S

 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence YLSNADERLRWQASSLPADDLCTENAIMLKRFNRYPLIIDPSGQATEFIMNEYKDRKITRTSFLDDAFRK
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Known secondary structure (DSSP) S
TT

SSS
SS

SSSTGGGT
SSSTT
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence NLESALRFGNPLLVQDVESYDPVLNPVLNREVRRTGGRVLITLGDQDIDLSPSFVIFLSTRDPTVEFPPD
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Known secondary structure (DSSP)



GGG

GGGT

SSS
TT
TT

S
SS



 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence LCSRVTFVNFTVTRSSLQSQCLNEVLKAERPDVDEKRSDLLKLQGEFQLRLRQLEKSLLQALNEVKGRIL
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Known secondary structure (DSSP) TTS






S
TT
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence DDDTIITTLENLKREAAEVTRKVEETDIVMQEVETVSQQYLPLSTACSSIYFTMESLKQIHFLYQYSLQF
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Known secondary structure (DSSP)
TGGGT
TT



 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence FLDIYHNVLYENPNLKGVTDHTQRLSIITKDLFQVAFNRVARGMLHQDHITFAMLLARIKLKGTVGEPTY
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Known secondary structure (DSSP) TS
TTTTT


TTS
SSSTSSSS


 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence DAEFQHFLRGNEIVLSAGSTPRIQGLTVEQAEAVVRLSCLPAFKDLIAKVQADEQFGIWLDSSSPEQTVP
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Known secondary structure (DSSP) SSTTS

SS



STT
S
TTSGGGTTT
ST
S
TTT


 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence YLWSEETPATPIGQAIHRLLLIQAFRPDRLLAMAHMFVSTNLGESFMSIMEQPLDLTHIVGTEVKPNTPV
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Known secondary structure (DSSP)




SS



GGG
TTSTTGGGS


T

SSS
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence LMCSVPGYDASGHVEDLAAEQNTQITSIAIGSAEGFNQADKAINTAVKSGRWVMLKNVHLAPGWLMQLEK
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Known secondary structure (DSSP)
TT

STT



TTTTTTT
TTTS
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence KLHSLQPHACFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGVKANMLRTFSSIPVSRICKSPNERARLYF
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Known secondary structure (DSSP) TS



TT



TTS
S


SS
TTTTTSSST
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence LLAWFHAIIQERLRYAPLGWSKKYEFGESDLRSACDTVDTWLDDTAKGRQNISPDKIPWSALKTLMAQSI
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Known secondary structure (DSSP) GGGTTTSSSS




SSS

S

GGGS
TT
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence YGGRVDNEFDQRLLNTFLERLFTTRSFDSEFKLACKVDGHKDIQMPDGIRREEFVQWVELLPDTQTPSWL
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Known secondary structure (DSSP) SGGG

SSSGGGGSSS
BSSS
SSSS


B



SST

S


GGGT
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence GLPNNAERVLLTTQGVDMISKMLKMQAWMRTLHTTASNWLHLIPQTLSHLKRTVENIKDPLFRFFEREVK
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Known secondary structure (DSSP) TS
TTSS

S









TTTSS
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence MGAKLLQDVRQDLADVVQVCEGKKKQTNYLRTLINELVKGILPRSWSHYTVPAGMTVIQWVSDFSERIKQ
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Known secondary structure (DSSP) TT
S


TT


TTT

S


SS

 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence LQNISLAAASGGAKELKNIHVCLGGLFVPEAYITATRQYVAQANSWSLEELCLEVNVTFGVTGLKLQGAT
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Known secondary structure (DSSP)
SSTTTTS
TTS
S
SS

SSS



SS
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence CNNNKLSLSNAISTALPLTQLRWVKQTNTEKKASVVTLPVYLNFTRADLIFTVDFEIATKEDPRSFYERG
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Known secondary structure (DSSP) SSS



S

S







TTSSSS



TT

TT
 ......
Sequence VAVLCT
Predicted secondary structure

SS confidence





Known secondary structure (DSSP)




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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