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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c8fd5A_

Fold library idPDB HeaderMoleculeTitle
c8fd5A_4.57PDB header: viral proteinChain: A: PDB Molecule: nucleoprotein;


Added to library: Sat Jan 14 08:46:27 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQ
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Known secondary structure (DSSP)

SS
TT
TTTS
TTSSS

SSS
S

TTTT







SS
TT











SS






SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence GVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALN
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Known secondary structure (DSSP)
S


TTT
SS




S


S

SSGGGS

TT
SSTT

SSS
SSS




TT


 .........150.........160.........170.........180.........190.........200.........210
Sequence TPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARM
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Known secondary structure (DSSP)


STTTS

TTS
S






SSS


TT
B




TTT

SS


TTS

S
SS




SS


S
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence AGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPE
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Known secondary structure (DSSP) SSSSTTTTT


TT
S






S

SSGGGGS
GGG


BTTB
S
S
SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence QTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQV
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Known secondary structure (DSSP) SSS
SB


TT
TTTTSS

TTTS



TTSS







TTSTT
 .........360.........370.........380.........390.........400.........410.........
Sequence ILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMSSADSTQA
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Known secondary structure (DSSP) BTGGGGSTTTSS




TT





SS

S
S


STT

TTSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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