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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c8fcyA_

Fold library idPDB HeaderMoleculeTitle
c8fcyA_3.40PDB header: motor proteinChain: A: PDB Molecule: cytoplasmic dynein 1 heavy chain 1;


Added to library: Sat Jun 24 10:10:53 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LKQIREVWNTYELDLVNYQNKCRLIRGWDDLFNKVKEHINSVSAMKLSPYYKVFEEDALSWEDKLNRIMA
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Known secondary structure (DSSP)
TS




TTS



STTTSS

SSSTTSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence LFDVWIDVQRRWVYLEGIFTGSADIKHLLPVETQRFQSISTEFLALMKKVSKSPLVMDVLNIQGVQRSLE
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Known secondary structure (DSSP) TSSTTTTTSSS

SSTTTSSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence RLADLLGKIQKALGEYLERERSSFPRFYFVGDEDLLEIIGNSKNVAKLQKHFKKMFAGVSSIILNEDNSV
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Known secondary structure (DSSP) SSGGGGTS
S
SS
SSGGGTGGGTSSS


TTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence VLGISSREGEEVMFKTPVSITEHPKINEWLTLVEKEMRVTLAKLLAESVTEVEIFGKATSIDPNTYITWI
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Known secondary structure (DSSP)
SSS
TTT

STT
SS

 .........290.........300.........310.........320.........330.........340.........350
Sequence DKYQAQLVVLSAQIAWSENVETALSSMGGGGDAAPLHSVLSNVEVTLNVLADSVLMEQPPLRRRKLEHLI
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Known secondary structure (DSSP) S
TTTT
S
TSSS


 .........360.........370.........380.........390.........400.........410.........420
Sequence TELVHQRDVTRSLIKSKIDNAKSFEWLSQMRFYFDPKQTDVLQQLSIQMANAKFNYGFEYLGVQDKLVQT
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Known secondary structure (DSSP) SSTTT


TT
TS

TT
SSGGGSSSS







S






 .........430.........440.........450.........460.........470.........480.........490
Sequence PLTDRCYLTMTQALEARLGGSPFGPAGTGKTESVKALGHQLGRFVLVFNCDETFDFQAMGRIFVGLCQVG
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Known secondary structure (DSSP) TT
SSTTS
TT







SSS

TTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence AWGCFDEFNRLEERMLSAVSQQVQCIQEALREHSNPNYDKTSAPITCELLNKQVKVSPDMAIFITMNLPD
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Known secondary structure (DSSP)




B
GGGS
GGGG
STT
S
SS

SSSS

TT


B
B



T
 .........570.........580.........590.........600.........610.........620.........630
Sequence NLKKLFRSLAMTKPDRQLIAQVMLYSQGFRTAEVLANKIVPFFKLCDEQLSSQSHYDFGLRALKSVLVSA
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Known secondary structure (DSSP) TTTTT




TT
SSTTTS


TT


S
 .........640.........650.........660.........670.........680.........690.........700
Sequence GNVKRERIQKIKREIAENLPEQEILIQSVCETMVPKLVAEDIPLLFSLLSDVFPGVQYHRGEMTALREEL
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Known secondary structure (DSSP) T






STTS
SSSSTT







 .........710.........720.........730.........740.........750.........760.........770
Sequence KKVCQEMYLTYGDGEEVGGMWVEKVLQLYQITQINHGLMMVGPSGSGKSMAWRVLLKALERLEGVEGVAH
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Known secondary structure (DSSP) TT



SSSSTTTT
S



TTSSS

 .........780.........790.........800.........810.........820.........830.........840
Sequence IIDPKAISKDHLYGTLDPNTREWTDGLFTHVLRKIIDSVRGELQKRQWIVFDGDVDPEWVENLNSVLDDN
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Known secondary structure (DSSP)
TTSS
TTTTT
S
SS
SSS
S


TTTSTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence KLLTLPNGERLSLPPNVRIMFEVQDLKYATLATVSRCGMVWFSEDVLSTDMIFNNFLARLRSIPLSPMLQ
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Known secondary structure (DSSP)
TTT

TT
S


S

SS


B

GGGS
SS


 .........920.........930.........940.........950.........960.........970.........980
Sequence IQRDAATIMQPYFTSNGLVTKALEHAFQLEHIMDLTRLRCLGSLFSMLHQACRNVAQYNANHPDFPMQIE
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Known secondary structure (DSSP) GGG
SSSTTGGGS

SS



SSS


 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence QLERYIQRYLVYAILWSLSGDSRLKMRAELGEYIRRITTVPLPTAPNIPIIDYEVSISGEWSPWQAKVPQ
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Known secondary structure (DSSP) STTS


S




SS

GGGTTTGGGG


 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence IEVETHKVAAPDVVVPTLDTVRHEALLYTWLAEHKPLVLCGPPGSGKTMTLFSALRALPDMEVVGLNFSS
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Known secondary structure (DSSP)



TT

STTS




TT



TTSSSTT

T
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence ATTPELLLKTFDHYCEYRRTPNGVVLAPVQLGKWLVLFCDEINLPDMDKYGTQRVISFIRQMVEHGGFYR
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Known secondary structure (DSSP) T

T

B


SSS
B
SSTT
TTT
S


TTS

SS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence TSDQTWVKLERIQFVGACNPPTDPGRKPLSHRFLRHVPVVYVDYPGPASLTQIYGTFNRAMLRLIPSLRT
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Known secondary structure (DSSP) TTT

SS

TTSTT




TT






GGG
TTTGG
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence YAEPLTAAMVEFYTMSQERFTQDTQPHYIYSPREMTRWVRGIFEALRPLETLPVEGLIRIWAHEALRLFQ
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Known secondary structure (DSSP) GSS
TTTSTT



SS

S

S
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence DRLVEDEERRWTDENIDTVALKHFPNIDREKAMSRPILYSNWLSKDYIPVDQEELRDYVKARLKVFYEEE
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Known secondary structure (DSSP) SS

S
TTS

TTT

SSSSSS


S
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence LDVPLVLFNEVLDHVLRIDRIFRQPQGHLLLIGVSGAGKTTLSRFVAWMNGLSVYQIKVHRKYTGEDFDE
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Known secondary structure (DSSP)







STT

S
TTSSTT





TT

 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence DLRTVLRRSGCKNEKIAFIMDESNVLDSGFLERMNTLLANGEVPGLFEGDEYATLMTQCKEGAQKEGLML
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Known secondary structure (DSSP) TGGG

GGG

SSSSS
TT
S
T


 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence DSHEELYKWFTSQVIRNLHVVFTMNPSSEGLKDRAATSPALFNRCVLNWFGDWSTEALYQVGKEFTSKMD
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Known secondary structure (DSSP)

T
S
S
TTS




TSTT
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence LEKPNYIVPDYMPVVYDKLPQPPSHREAIVNSCVFVHQTLHQANARLAKRGGRTMAITPRHYLDFINHYA
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Known secondary structure (DSSP)



S







SSTTS
SS


TT






 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence NLFHEKRSELEEQQMHLNVGLRKIKETVDQVEELRRKVNRSTALLKSLSAERERWEKTSETFKNQMSTIA
Predicted secondary structure
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Known secondary structure (DSSP)

TS
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence GDCLLSAAFIAYAGYFDQQMRQNLFTTWSHHLQQANIQFRTDIARTEYLSNADERLRWQASSLPADDLCT
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Known secondary structure (DSSP) TTTSS
TT



SS

TS
TT



 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence ENAIMLKRFNRYPLIIDPSGQATEFIMNEYKDRKITRTSFLDDAFRKNLESALRFGNPLLVQDVESYDPV
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Known secondary structure (DSSP) S
SS

SSSTTTTT
TT
TTT


TTS

GG
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence LNPVLNREVRRTGGRVLITLGDQDIDLSPSFVIFLSTRDPTVEFPPDLCSRVTFVNFTVTRSSLQSQCLN
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Known secondary structure (DSSP) GTT

TT
STTS


S


S
SS



TS



 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence EVLKAERPDVDEKRSDLLKLQGEFQLRLRQLEKSLLQALNEVKGRILDDDTIITTLENLKREAAEVTRKV
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Known secondary structure (DSSP) S
TTTTS
GGG
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence EETDIVMQEVETVSQQYLPLSTACSSIYFTMESLKQIHFLYQYSLQFFLDIYHNVLYENPNLKGVTDHTQ
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Known secondary structure (DSSP) TGGGT
TT



S
GGGTT


SS
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence RLSIITKDLFQVAFNRVARGMLHQDHITFAMLLARIKLKGTVGEPTYDAEFQHFLRGNEIVLSAGSTPRI
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Known secondary structure (DSSP) TTS
TTSSSSS


TGGG


SS




S
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence QGLTVEQAEAVVRLSCLPAFKDLIAKVQADEQFGIWLDSSSPEQTVPYLWSEETPATPIGQAIHRLLLIQ
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Known secondary structure (DSSP) TTS
TSTTTS
SS
TTT
SSTTSS





SS


S
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence AFRPDRLLAMAHMFVSTNLGESFMSIMEQPLDLTHIVGTEVKPNTPVLMCSVPGYDASGHVEDLAAEQNT
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Known secondary structure (DSSP) S
GGG
TTSSS


TTTTS
TTS

TT


T
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence QITSIAIGSAEGFNQADKAINTAVKSGRWVMLKNVHLAPGWLMQLEKKLHSLQPHACFRLFLTMEINPKV
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Known secondary structure (DSSP)

SSSTTTT

STTS
TS



SS



TTS
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence PVNLLRAGRIFVFEPPPGVKANMLRTFSSIPVSRICKSPNERARLYFLLAWFHAIIQERLRYAPLGWSKK
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Known secondary structure (DSSP)
S




SS
SS
TTGGGSTTTSSSS
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence YEFGESDLRSACDTVDTWLDDTAKGRQNISPDKIPWSALKTLMAQSIYGGRVDNEFDQRLLNTFLERLFT
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Known secondary structure (DSSP)





SSS


SS
S
TTSSSS

SSS
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence TRSFDSEFKLACKVDGHKDIQMPDGIRREEFVQWVELLPDTQTPSWLGLPNNAERVLLTTQGVDMISKML
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Known secondary structure (DSSP) GGGGSS

S
SSSS





SSTS
S


GGGGTS
TT
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence KMQAWMRTLHTTASNWLHLIPQTLSHLKRTVENIKDPLFRFFEREVKMGAKLLQDVRQDLADVVQVCEGK
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Known secondary structure (DSSP) T

S









SS
TT
TT
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence KKQTNYLRTLINELVKGILPRSWSHYTVPAGMTVIQWVSDFSERIKQLQNISLAAASGGAKELKNIHVCL
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Known secondary structure (DSSP) S


TT


GGG

S


SS


SSSSG
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence GGLFVPEAYITATRQYVAQANSWSLEELCLEVNVTTSQGATLDACSFGVTGLKLQGATCNNNKLSLSNAI
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Known secondary structure (DSSP) GG
SSSS

GGG
SS





SS

SSSS
SSS
 .........2810.........2820.........2830.........2840.........2850.........2860....
Sequence STALPLTQLRWVKQTNTEKKASVVTLPVYLNFTRADLIFTVDFEIATKEDPRSFYERGVAVLCT
Predicted secondary structure





























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Known secondary structure (DSSP)


S






TTSSSS



TTS
T



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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