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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c8f5dA_

Fold library idPDB HeaderMoleculeTitle
c8f5dA_2.56PDB header: ligaseChain: A: PDB Molecule: multifunctional fusion protein;


Added to library: Sat Jun 10 10:26:47 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PTNRLNAVQRQHLDQALAWLRGCVAPTADLRLDSREIEPGDVFVACPSDGRQFMDQALARGASAILYETE
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Known secondary structure (DSSP)





S
TT

S
GGG

TT




TTT
S
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence GASVAPVGAQALPVAQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIGT
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Known secondary structure (DSSP) S




SSSS
TTTT
GGGSS
SSSTTS
T
 .........150.........160.........170.........180.........190.........200.........210
Sequence LGALLPDGQSLPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDHIRIAVAGFTNLYHGTMQRYEQA
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Known secondary structure (DSSP) T
TT

B


TT



TTTTT






S
 .........220.........230.........240.........250.........260.........270.........280
Sequence KAALFQWPDLQAAVVNADDPAGERLLASLPAALKTGYSLQGAPADVHARDLQATAHGQVFTLALPDGEAQ
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Known secondary structure (DSSP) TTSTT

TTSS
TTTSS

S
STTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence IVTRLLGQHNISNLLLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQHALVVVDYAHTPDALA
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Known secondary structure (DSSP)


STT

TT



TTSS











S
 .........360.........370.........380.........390.........400.........410.........420
Sequence RALTALRPVAQARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSESPQDIIDQILAGIP
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Known secondary structure (DSSP) T




TTS
TT
S

S

BTS
TTS
 .........430.........440.........450.........460.........470.........480.........490
Sequence AGMRAAVQPDRALAIMQTLWSAAPDDVILLAGKGHETYQDIGGRKLPFDDRQWARLALLLPHAGAVSTDT
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Known secondary structure (DSSP) TT



SSSS
TT
S
TT

TT

GGG
S
S
T
 .........500.........510.........520.........530.........540.........550.........560
Sequence RRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVADVALPQLVLGDTLAALGRMGTAWRSSFTL
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Known secondary structure (DSSP) TT

TT




SSS
GGGGTT
SSS

TT

S

SST

S
 .........570.........580.........590.........600.........610.........620.........630
Sequence PVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGNFNNEIGVPLTLLRLRARHRAAVFELGMNHPGEI
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Known secondary structure (DSSP)

SS

GGG

TT

STTTT

TT




SSTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence ERLAAMAAPTVALVTNAQRHQEFHTVEAVAHENGAVIGALPEDGVAVYPGDEPYAAIWDKLAGARRVLRF
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Known secondary structure (DSSP)

S










TS
TT
SSSTTTTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence GLQPGLDVYAERVVTQAHGTQCGVVTPAGSAGLDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAGF
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Known secondary structure (DSSP) SSTTSSTTTTSS
ST

T
 ..
Sequence QA
Predicted secondary structure

SS confidence

Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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