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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c8dyvA_

Fold library idPDB HeaderMoleculeTitle
c8dyvA_3.97PDB header: motor proteinChain: A: PDB Molecule: cytoplasmic dynein 1 heavy chain 1;


Added to library: Sat Feb 4 20:29:55 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LGISSREGEEVMFKTPLVEKEMRVTLAKLLAESVTEVEIFGKATSIDPNTYITWIDKYQAQLVVLSAQIA
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Known secondary structure (DSSP)

B

SSS

B

S



SS

S
 .........80.........90.........100.........110.........120.........130.........140
Sequence WSENVETALSSAAPLHSVLSNVEVTLNVLADSVLMEQPPLRRRKLEHLITELVHQRDVTRSLIKSKIDNA
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Known secondary structure (DSSP)

TTS


TTTS



T
 .........150.........160.........170.........180.........190.........200.........210
Sequence KSFEWLSQMRFYFDPKQTDVLQQLSIQMANAKFNYGFEYLGVQDKLVQTPLTDRCYLTMTQALEARLGGS
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Known secondary structure (DSSP) T
TS

TT
SSTTSSTT















TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence PFGPAGTGKTESVKALGHQLGRFVLVFNCDETFDFQAMGRIFVGLCQVGAWGCFDEFNRLEERMLSAVSQ
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Known secondary structure (DSSP) SSSSSSTT



STT

T
S
TTSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence QVQCIQEALREHSNITCELLNKQVKVSPDMAIFITMNPGYAGRSNLPDNLKKLFRSLAMTKPDRQLIAQV
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Known secondary structure (DSSP)

TT

TT



TTSTT




TT




 .........360.........370.........380.........390.........400.........410.........420
Sequence MLYSQGFRTAEVLANKIVPFFKLCDEQLSSQSHYDFGLRALKSVLVSAGNVKRERIQKIAENLPEQEILI
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Known secondary structure (DSSP) T
TTS


TT


S

TT


 .........430.........440.........450.........460.........470.........480.........490
Sequence QSVCETMVPKLVAEDIPLLFSLLSDVFPGVQYHRGEMTALREELKKVCQEMYLTYGDGEEVGGMWVEKVL
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Known secondary structure (DSSP) TSTT

GGGS
S







TT



SSSSTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence QLYQITQINHGLMMVGPSGSGKSMAWRVLLKALERLEGVEGVAHIIDPKAISKDHLYGTLDPNTREWTDG
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Known secondary structure (DSSP) TT
SS
SSSS




STTS

TTSS

 .........570.........580.........590.........600.........610.........620.........630
Sequence LFTHVLRKIIDSVRGELQKRQWIVFDGDVDPEWVENLNSVLDDNKLLTLPNGERLSLPPNVRIMFEVQDL
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Known secondary structure (DSSP)
TTSGGGS


GGGTTTSSSS

TT



TT
S

 .........640.........650.........660.........670.........680.........690.........700
Sequence KYATLATVSRCGMVWFSEDVLSTDMIFNNFLARLRSIPLDEASPMLQIQRDAATIMQPYFTSNGLVTKAL
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Known secondary structure (DSSP) TT

S

TTSS
S
S



TTTSSSSTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence EHAFQLEHIMDLTRLRCLGSLFSMLHQACRNVAQYNANHPDFPMQIEQLERYIQRYLVYAILWSLSGDSR
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Known secondary structure (DSSP) TTS

SS



TTS


TSSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence LKMRAELGEYIRRITTVPLPTAPNIPIIDYEVSISGEWSPWQAKVPQIEVETHKVAAPDVVVPTLDTVRH
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Known secondary structure (DSSP)

S




SSS
GGG
TTS
GGGG






GGGSS
TT




 .........850.........860.........870.........880.........890.........900.........910
Sequence EALLYTWLAEHKPLVLCGPPGSGKTMTLFSALRALPDMEVVGLNFSSATTPELLLKTFDHYCEYRRTPNG
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Known secondary structure (DSSP) TT


STTSSTT
TT



TT

TT
 .........920.........930.........940.........950.........960.........970.........980
Sequence VVLAPVQLGKWLVLFCDEINLPDMDKYGTQRVISFIRQMVEHGGFYRTSDQTWVKLERIQFVGACNPPTD
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Known secondary structure (DSSP) SSTT
S
TT
S


TTS

STTTTSS

TTS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence PGRKPLSHRFLRHVPVVYVDYPGPASLTQIYGTFNRAMLRLIPSLRTYAEPLTAAMVEFYTMSQERFTQD
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Known secondary structure (DSSP) TT




TTS




TTSSGGGGGGTTS
TT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence TQPHYIYSPREMTRWVRGIFEALRPLETLPVEGLIRIWAHEALRLFQDRLVEDEERRWTDENIDTVALKH
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Known secondary structure (DSSP) T
TT



TTTTS


SSSS

S
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence FPKAMSRPILYSNWLSKDYIPVDQEELRDYVKARLKVFYEEELDVPLVLFNEVLDHVLRIDRIFRQPQGH
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Known secondary structure (DSSP)



SSS


SSSSSS


T







STT

 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence LLLIGVSGAGKTTLSRFVAWMNGLSVYQIKVHRKYTGEDFDEDLRTVLRRSGCKNEKIAFIMDESNVLDS
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Known secondary structure (DSSP)
TTSSTT





SS

S




GGGTT
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence GFLERMNTLLANGEVPGLFEGDEYATLMTQCKEGAQKEGLMLDSHEELYKWFTSQVIRNLHVVFTMNPSS
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Known secondary structure (DSSP) S

TTSS
TT



S

S
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence EGLKDRAATSPALFNRCVLNWFGDWSTEALYQVGKEFTSKMDLEKPNYIVPDYMPVVYDKLPQPPSHREA
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Known secondary structure (DSSP)
GGGGTSS


STTS



TT



SS


SSSS

SS

 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence IVNSCVFVHQTLHQANARLAKRGGRTMAITPRHYLDFINHYANLFHEKRSELEEQQMHLNVGLRKIKETV
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Known secondary structure (DSSP) TT






 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence DQNRSTALLKSLSAERERWEKTSETFKNQMSTIAGDCLLSAAFIAYAGYFDQQMRQNLFTTWSHHLQQAN
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Known secondary structure (DSSP)

TTTTTSS
TT
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence IQFRTDIARTEYLSNADERLRWQASSLPADDLCTENAIMLKRFNRYPLIIDPSGQATEFIMNEYKDRKIT
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Known secondary structure (DSSP)



SSS
S
TT

SSTTS
SS

SSSTTTTT
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence RTSFLDDAFRKNLESALRFGNPLLVQDVESYDPVLNPVLNREVRRTGGRVLITLGDQDIDLSPSFVIFLS
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Known secondary structure (DSSP) TTSTT




SS

GGGTT
TT

SS



S


 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence TRDPTVEFPPDLCSRVTFVNFTVTRSSLQSQCLNEVLKAERPDVDEKRSDLLKLQGEFQLRLRQLEKSLL
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Known secondary structure (DSSP) S
TT



GGGTTSS




 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence QALNILDDDTIITTLENLKREAAEVTRKVEETDIVMQEVETVSQQYLPLSTACSSIYFTMESLKQIHFLY
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Known secondary structure (DSSP)

TT
TGGGGT
SS
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence QYSLQFFLDIYHNVLYENPNTDHTQRLSIITKDLFQVAFNRVARGMLHQDHITFAMLLARIKLPTYDAEF
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Known secondary structure (DSSP)


T




TTS
GGGT




 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence QHFLRGNGLTVEQAEAVVRLSCLPAFKDLIAKVQADEQFGIWLDSSSPEQTVPYLWTPATPIGQAIHRLL
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Known secondary structure (DSSP) T




TTSSTTTT
T
S
GGGS








 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence LIQAFRPDRLLAMAHMFVSTNLGESFMSIMEQPLDLTHIVGTEVKPNTPVLMCSVPGYDASGHVEDLAAE
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Known secondary structure (DSSP)
GGG
GGGSTTSSS




TT


TT

S
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence QNTQITSIAIGSAEGFNQADKAINTAVKSGRWVMLKNVHLAPGWLMQLEKKLHSLQPHACFRLFLTMEIN
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Known secondary structure (DSSP) T

SSST

GGG
TT



TT
SS
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence PKVPVNLLRAGRIFVFEPPPGVKANMLRTFSSIPVSRICKSPNERARLYFLLAWFHAIIQERLRYAPLGW
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Known secondary structure (DSSP) TTS
S


SS
TSS
GGGTTTS
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence SKKYEFGESDLRSACDTVDTWLDDTAKGRQNISPDKIPWSALKTLMAQSIYGGRVDNEFDQRLLNTFLER
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Known secondary structure (DSSP) SS




STT
S


GGGS
TTTTSS

S
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence LFTTRSFDSEFKLACKVDGHKDIQMPDGIRREEFVQWVELLPDTQTPSWLGLPNNAERVLLTTQGVDMIS
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Known secondary structure (DSSP) SSGGGGSTT
TTT



SST

S


GGGGTS
S
STTT
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence KMLKMQTLHTTASNWLHLIPQTLSHLKRIKDPLFRFFEREVKMGAKLLQDVRQDLADVVQVCEGKKKQTN
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Known secondary structure (DSSP)

SSSTTTS







TTT




 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence YLRTLINELVKGILPRSWSHYTVPAGMTVIQWVSDFSERIKQLQNISLAAASKELKNIHVCLGGLFVPEA
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Known secondary structure (DSSP) TTB

GGG

S


TT
B


TTTS
TTTSSS
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence YITATRQYVAQANSWSLEELCLEVNVFGVTGLKLQGATCNNNKLSLLPLTQLRWVKQSVVTLPVYLNFTR
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Known secondary structure (DSSP) T

STT



T
B
SSS
BB






SSSS
 .........2530.........2540.........
Sequence ADLIFTVDFEIATKEDPRSFYERGVAVLC
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Known secondary structure (DSSP)

B


B
TTS
TTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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