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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c8dolC_

Fold library idPDB HeaderMoleculeTitle
c8dolC_2.80PDB header: transport proteinChain: C: PDB Molecule: cag pathogenicity island protein (cag5);


Added to library: Sat Feb 18 08:58:16 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VDDLFGSASWETEEKMIKAKLITPNNKKRAFDKREVIVGRRGLGDFIAYAGQAFIGLIAPTRSGKGVGFI
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Known secondary structure (DSSP)


TT






TTSS
TTGGG



S

TT
SS


TTS
T
 .........80.........90.........100.........110.........120.........130.........140
Sequence MPNMINYPQNIVVFDPKADTMETCGKIREKRFNQKVFIYEPFSLKTHRFNPFAYVDFGDFSTQIFGLAKL
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Known secondary structure (DSSP)

S
SSS
TS


TTSSS




GGGSS


 .........150.........160.........170.........180.........190.........200.........210
Sequence VFPERPNEKDPFFSNQARNLFVINCNIYRDLMWKGLEFVKRKKPETPTMFFIGSMASGINVVSLMEFFGG
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Known secondary structure (DSSP) S


SS
S



TTTTGGG



S

TTTTT





TT
TT

 .........220.........230.........240.........250.........260.........270.........280
Sequence GDNLRVLSPATRNMWNSFKTMYSSVQGVYTSAFAPYNNAMIRNFTSANDFDFRRLRIDEVSIGVIANPKE
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Known secondary structure (DSSP)


TTTSTGGGTTSS


GGGGSTS

S

GGGTTTS



TTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence STIVGPILELFFNVMIYSNLILPIHDPQCKRSCLMLMDEFTLCGYLETFVKAVGIMAEYNMRPAFVFQSK
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Known secondary structure (DSSP)
GGGTT
S
TTT
TT



TTGGGG


TTTGGGGTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence AQLENDPPLGYGRNGAKTILDNLSLNMYYGINNDNYYEHFEKLSKVLGKYTRQDVSRSIDDNTGKTNTSI
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Known secondary structure (DSSP) SS
TTTS

TT



GGG

TTT

 .........430.........440.........450.........460.........470.........480.........490
Sequence SNKERFLMTPDELMTMGDELIILENTLKPIKCHKALYYDDPFFTDELIKVSPSLSKKYKLGKVPNQATFY
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Known secondary structure (DSSP) SS
T
TTTTS




TTT

TTS
SSS


TTT
 .........500.........510
Sequence DDLQAAKTRGELSYDKSLVP
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Known secondary structure (DSSP) TTTTS


SS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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