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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c8dkcD_

Fold library idPDB HeaderMoleculeTitle
c8dkcD_3.50PDB header: transcriptionChain: D: PDB Molecule: dna-directed rna polymerase subunit beta';


Added to library: Sat Jun 24 09:22:13 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KNNFSKIRITLASPEEILENSFGEVLKPETINYRTYKPERDGLFCERIFGPVKDFECHCGKYKRIRYRGI
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Known secondary structure (DSSP)










TTTTTSS






BTTTTB

TTSSS


SSTT

TTSS

SGGGTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence VCDRCGVEVTEKKVRRERMGHIHLVVPVAHIWYFRSLPNKIGYLLGLPTKKLDAIIYYERYVVIQPGVAE
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Known secondary structure (DSSP) B
SSS

B
S
GGGGGT

SS



STT
T

TTS

S

SS
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence GLSQLDLLSEEEYLDKLDEIERTHKGNQNLEDTNPDKFIAKIGAEAIYDLLCRVDLDSISYELRDRANTD
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Known secondary structure (DSSP) S

TT
B

SS


S
STTTSTTT






ST


S
 .........220.........230.........240.........250.........260.........270.........280
Sequence GSQQRKTEALKRLQVVESFRASKGVNRPEWMVMKVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVIIRN
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Known secondary structure (DSSP)
TT
SS


GGGG

S

GGGS

TTT

 .........290.........300.........310.........320.........330.........340.........350
Sequence NRLKRLIEIKAPEVILRNEKRMLQEAVDSLFDNSRKSSAVKSDNNRPLKSLSDSLKGKQGRFRQNLLGKR
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Known secondary structure (DSSP) SS


S
SSS




TTT





S
TTTTTTTTTT


 .........360.........370.........380.........390.........400.........410.........420
Sequence VDYSARSVIVVGPELKMHECGLPKDMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVIWDILEYVM
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Known secondary structure (DSSP)
SS


SSS
TT
TSS


TT
SS

T
 .........430.........440.........450.........460.........470.........480.........490
Sequence KGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLSCTAFNADFDGDQMAVHLPLSNEAILEAQLLMLA
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Known secondary structure (DSSP) TTS

SS

SGGG
SSSS
TTTT

SS






STSG
 .........500.........510.........520.........530.........540.........550.........560
Sequence SHNILNPANGAPITVPSQDMVLGLYYITKLRPNTKGHGLIFYGPEEATIAYNEGKVDIHAPIKVYVEDYE
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Known secondary structure (DSSP) GG

B
TTSS
BS



T


SS
TTTT
B

STTSS
S


 .........570.........580.........590.........600.........610.........620.........630
Sequence NGELVRRMVETSVGRLMVNEYVPKKVGYVNEVLGKKALRDIIGSVIKICGVATTAKFLDDIKNLGYYMAF
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Known secondary structure (DSSP) TT
TTTTS
TTS



S


S
 .........640.........650.........660.........670.........680.........690.........700
Sequence KGGLSFNLADVLIPDEKDQLIQEGYTAVEQIMQDYSMGFITFNERYNQIIDTWTHINGRLSNVLIKQLSS
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Known secondary structure (DSSP) T




GGGS


TT
S
 .........710.........720.........730.........740.........750.........760.........770
Sequence DNDGFNSVFMMMDSGARGSKEQIRQLSGMRGLMAKPQKSGAEGGQIIENPILSNFKEGLSVLEYFISTHG
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Known secondary structure (DSSP) TTSS

TTSS

S

B

B


SSSS


SB
SS
B


TTT


 .........780.........790.........800.........810.........820.........830.........840
Sequence ARKGLADTALKTADAGYLTRRLVDVSHDVIITEEDCGTLRGLLTTELKQNEDVVASLYERILGRVSVHDI
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Known secondary structure (DSSP) TS






BS








TT
TT

BSS

 .........850.........860.........870.........880.........890.........900.........910
Sequence IHPTTGDIIVRAGEEIREQAAQIIEDSPIEAVEIRSVLTCESKKGVCAKCYGRNLATNRMVQRGEVVGVI
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Known secondary structure (DSSP) B
SSSS
B


TT



SS




TTT


TTS
B
B
SSSSSB

TT


 .........920.........930.........940.........950.........960.........970.........980
Sequence AAQSIGEPGTQLTTGGLPRVTELFEARNPSNPAIVSEIDGEIGFGKLKRGNREITVTSKLGEEKKYLIPL
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Known secondary structure (DSSP) GGGGT



STT


SS
B
B

S







SS





SSS





T
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence SKQLLVQENDFVRAGTPLSDGAITPADILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEVIVRQMMR
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Known secondary structure (DSSP) TS
B


TT

TT
B
BSS
B

TT



T
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence KVEIVDPGDTLFLEQQVVDKFEVMEENDRIWGKKVVIDAGDSQVLKAGQIVTARKLRDENSMLKRKDLKI
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Known secondary structure (DSSP)
TTS
S




GGGGGGGTSSTTTTTTTT

SSS

SSSTTS


STTTTTTS
SSSSSSSSSS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence VKVRDAKSATASQILQGITRAALQTKSFMSAASFQETTKVLNEAAICGKTDYLEGLKENVICGHLIPAGT
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Known secondary structure (DSSP) SSSSS






T


TTS
T



STS

TTGG
 .........1200.
Sequence GLRDYEKLVVM
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Known secondary structure (DSSP) GTSSSS

S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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