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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c8dkcC_

Fold library idPDB HeaderMoleculeTitle
c8dkcC_3.50PDB header: transcriptionChain: C: PDB Molecule: dna-directed rna polymerase subunit beta;


Added to library: Sat Jun 24 09:17:43 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TPTTNNKRINFASIKNPLFYPDFLEVQLKSFHDFLQLDTPPERRKKEGLYKVFAENFPITDTRNNFVLEF
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Known secondary structure (DSSP)









SS


S



ST

SS

SS

SSSS


SS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence LDYYIDPPKYSIEECLSRGLTYSVPLKAKLKLYCTDPDHEDFATVIQDVFLGPIPYMTSSGTFVINGAER
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Known secondary structure (DSSP)


SS
T



TTSS


TTS
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence VIVSQLHRSPGVFFGQSLHTNGTKLYSARIIPFKGSWIEFATDINNVMYAYIDRKKKLPVTTLLRAIGFE
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Known secondary structure (DSSP)



TT
SBS


TTS
TT
S

BT

 .........220.........230.........240.........250.........260.........270.........280
Sequence ADKDILDIFNSIIFNTLQKDPCNSEKEALYYVYRQLRNAEPADDASAREVITNLFFSDKRYDLGDVGRYR
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Known secondary structure (DSSP)


S
S

STTSSSS



TTT
B

 .........290.........300.........310.........320.........330.........340.........350
Sequence INKKLNLNIDPDIKVLTNEDIIEIIKYLIELVNSKASVDDIDHLSNRRVRTVGEQLYNQFGIGLARMART
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Known secondary structure (DSSP) TT



SS
SS

TT
S



SS
GGG


 .........360.........370.........380.........390.........400.........410.........420
Sequence VRDRMNVRDNEVFTPIDLVNAKTISSVVNSFFGTNALSQFMDQTNPLAEITHKRRLSALGPGGLSRERAG
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Known secondary structure (DSSP) S

SSS



T
SS


SSTT


STTS

TTT

 .........430.........440.........450.........460.........470.........480.........490
Sequence FEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKISDLGFITTPYREVKNGKVDFSDNGLKYYTAEEE
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Known secondary structure (DSSP) SGGGS

TT
TTTB
SS



STTTTTT

BBSS

SSS
TTSSSSSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence EEKTVAQGNAPLDENGRFVRERVKARYESDFPLVTPDEVDLMDVSPTQIASIAAALIPFLEHDDANRALM
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Known secondary structure (DSSP) TTS

SSS
B
TTSBB
SS

SSS


TTS

S
TT
SSBTTTTT
SS
TTS
 .........570.........580.........590.........600.........610.........620.........630
Sequence GSNMMRQAVPLLRPESPIVGTGIEGKLVKDSRTQIVAERGGEVVFVDASCIKIRYDRTADEEFVSFDDAI
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Known secondary structure (DSSP) TTB


SS



SS

TTTTS

S
B

S

SS
SGGGTSS






 .........640.........650.........660.........670.........680.........690.........700
Sequence VTYYLPKYRKTNQSTTIDLHPICSKGDRVEAGQILTEGYSTQGGELALGRNVQVAYMPWKGYNYEDAIVL
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Known secondary structure (DSSP)


SB

TTSB
B




TT

TT
B

SSTT

S


TTTTSSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence NERMVREDFFTSVHVDEYILEVRETKRGLEELTSDIPNVSEDATRDLDENGIVRIGAHIEPGDILIGKIT
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Known secondary structure (DSSP) S

S
TT

B
S

TT

SB
TTSBB
SS

TTS
B
 .........780.........790.........800.........810.........820.........830.........840
Sequence PKGESDPTPEEKLLRAIFGDKAGDVKDASLKATPSLRGVVIDTKLFSKAAKKKSRTSTKEAVSKLDETYA
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Known secondary structure (DSSP)

TT

S
TSSSS

TT




TT









S
S

STT
S
 .........850.........860.........870.........880.........890.........900.........910
Sequence KRQQQLHERLIEKLTELTKGKTCCGVKDYLNVELIKAGSKFTKKDLEALDFNVIQLSDWTNDAHTNELIK
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Known secondary structure (DSSP) TT

S


S



T

SSTTTTTTTSSSSS
SS
 .........920.........930.........940.........950.........960.........970.........980
Sequence AVAVNYLKHSKEIEAELRRRKLDETIGDELPAGIVQMAKVYIAKKRKIQVGDKMAGRHGNKGIVSKIVRQ
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Known secondary structure (DSSP) TTT
SS

TT


TT
TTS


S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence EDMPFLADGTPVDICLNPLGVPSRMNLGQIFEAVLAWAGRKMNVKFATPIFDGASLNDMNEWTDKAGLPR
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Known secondary structure (DSSP) TTS
B
TTS
B
S
GGGTTTTT
TTTT




SSS


TTS
S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence DGKTYLYDGGTGERFDQPATVGVTYFLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVW
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Known secondary structure (DSSP) SS

B
TTT

B
SS
BS

GGGS



SS



SSSS



SSSS






 .........1130.........1140.........1150.........1160.........1170.........1180....
Sequence ALEAFGASHILQEILTVKSDDVVGRSKAYEAIVKGDPMPTPGIPESLNVLLHELKGLGLSFSLD
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Known secondary structure (DSSP) TT
SSTTSS
T










SS






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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