PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c8d4yB_

Fold library id	PDB Header	Molecule	Title
c8d4yB_	2.90	PDB header: transcription	Chain: B: PDB Molecule: chromodomain-helicase-dna-binding protein 4;

Links to external resources
Added to library: Sat Dec 24 09:52:48 2022

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L P P L L A R V G G N I E V L G F N A R Q R K A F L N A I M R Y G M P P Q D A T Q W L V R D L R G K S E K E F K A Y V S L F M R H L C L S R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T T B
G G G
T T
T T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q H V L T R I G V M S L I R K K V Q E F E H V N G R W S M P E L A Q R F M F N I A D G G F T E L H S L W Q N E E R A A T V T K K T Y E I W H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S T T
T T
S T S
T T T S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R R H D Y W L L A G I I N H G Y A R W Q D I Q N D P R Y A I L N E P F K G E M N R G N F L E I K N K F L A R R F K L L E Q A L V I E E Q L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S G G G G G G G G G G T T
G G G S S

. . . . . . .

Sequence R A A Y L N M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	P	P	L	L	A	R	V	G	G	N	I	E	V	L	G	F	N	A	R	Q	R	K	A	F	L	N	A	I	M	R	Y	G	M	P	P	Q	D	A	T	Q	W	L	V	R	D	L	R	G	K	S	E	K	E	F	K	A	Y	V	S	L	F	M	R	H	L	C	L	S	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S					T	T					T	T	B																			G	G	G			T	T			T	T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	H	V	L	T	R	I	G	V	M	S	L	I	R	K	K	V	Q	E	F	E	H	V	N	G	R	W	S	M	P	E	L	A	Q	R	F	M	F	N	I	A	D	G	G	F	T	E	L	H	S	L	W	Q	N	E	E	R	A	A	T	V	T	K	K	T	Y	E	I	W	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																										S		S	S	T	T												T	T		S	T															S			T	T	T	S		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	R	H	D	Y	W	L	L	A	G	I	I	N	H	G	Y	A	R	W	Q	D	I	Q	N	D	P	R	Y	A	I	L	N	E	P	F	K	G	E	M	N	R	G	N	F	L	E	I	K	N	K	F	L	A	R	R	F	K	L	L	E	Q	A	L	V	I	E	E	Q	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	T								S	G	G	G	G	G	G	G	G	G	G	T	T		G	G	G	S	S
	.	.	.	.	.	.	.
Sequence	R	A	A	Y	L	N	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T