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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c8d4aA_

Fold library idPDB HeaderMoleculeTitle
c8d4aA_2.74PDB header: dna binding protein/rna/dnaChain: A: PDB Molecule: orfb_zn_ribbon domain-containing protein;


Added to library: Sat Jan 21 13:25:42 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MLHAFTNQYQLSKTLRFGATLKEDEKKCKSHEELKGFVDISYENMKSSATENELVKKCERCYSEIVKFHN
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Known secondary structure (DSSP)
GGGGB

B

S



SSS




TTT


 .........80.........90.........100.........110.........120.........130.........140
Sequence AWEKIYYRTDQIAVYKDFYRQLSRKARFDAGKQNSQLITLASLCGMYQGAKLSRYITNYWKDNITRQKSF
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Known secondary structure (DSSP) TTTTT
TTT
TT







SGGG


TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence LKDFSQQLHQYTRALEKSDKAHTKPNLINFNKTFMVLANLVNEIVIPLSNGAISFPNISKLEDGEESHLI
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Known secondary structure (DSSP) SGGGGGG


TS
GGGSS

TTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence EFALNDYSQLSELIGELKDAIATNGGYTPFAKVTLNHYTAEQKPHVFKNDIDAKIRELKLIGLVETLKGK
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Known secondary structure (DSSP) T
S

BTTSSGGGTT





TTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence SSEQIEEYFSNLDKFSTYNDRNQSVIVRTQCFKYKPIPFLVKHQLAKYISEPNGWDEDAVAKVLDAVGAI
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Known secondary structure (DSSP)
TS
S
TTS
TTS




TTTT

TTT

 .........360.........370.........380.........390.........400.........410.........420
Sequence RSPAHDYANNQEGFDLNHYPIKVAFDYAWEQLANSLYTTVTFPQEMCEKYLNSIYGCEVSKEPVFKFYAD
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Known secondary structure (DSSP)



TT

GGGS
TTTS

SS
SS
GGG
 .........430.........440.........450.........460.........470.........480.........490
Sequence LLYIRKNLAVLEHKNNLPSNQEEFICKINNTFENIVLPYKISQFETYKKDILAWINDGHDHKKYTDAKQQ
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Known secondary structure (DSSP) T
SSS

S
T


SS

TTT


 .........500.........510.........520.........530.........540.........550.........560
Sequence LGFIRGGLKGRINPYTKLTNEFKQISSTYGKTFAELRDKFKEKNEITKITHFGIIIEDKNRDRYLLASEL
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Known secondary structure (DSSP) TTTT


GGG






TT


 .........570.........580.........590.........600.........610.........620.........630
Sequence KHEQINHVSTILNKLDKSSEFITYQVKSLTSKTLIKLIKNHTTKKGAISPYADFHTSKTGFNKNEIEKNW
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Known secondary structure (DSSP)

SSS
TT
BSSSS

T



SS


TTTTT

SSTT

S
 .........640.........650.........660.........670.........680.........690.........700
Sequence DNYKREQVLVEYVKDCLTDSTMAKNQNWAEFGWNFEKCNSYEDIEHEIDQKSYLLQSDTISKQSIASLVE
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Known secondary structure (DSSP) TTSSTTGGGG



TT

S

 .........710.........720.........730.........740.........750.........760.........770
Sequence GGCLLLPIINQDITSKERKDKNQFSKDWNHIFEGSKEFRLHPEFAVSYRTPIEGYPVQKRYGRLQFVCAF
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Known secondary structure (DSSP) TT

B
TTTSSSS



STTT
SS
S


TT

TTSGGGS
 .........780.........790.........800.........810.........820.........830.........840
Sequence NAHIVPQNGEFINLKKQIENFNDEDVQKRNVTEFNKKVNHALSDKEYVVIGIDRGLKQLATLCVLDKRGK
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Known secondary structure (DSSP)


SS

B

SSS


SSSSTTS
 .........850.........860.........870.........880.........890.........900.........910
Sequence ILGDFEIYKKEFVRAEKRSESHWEHTQAETRHILDLSNLRVETTIEGKKVLVDQSLTLVKKNRDTPDEEA
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Known secondary structure (DSSP)



SSGGG
SS
TT
TTS
GGGS
B
SSSS
TTS

 .........920.........930.........940.........950.........960.........970.........980
Sequence TEENKQKIKLKQLSYIRKLQHKMQTNEQDVLDLINNEPSDEEFKKRIEGLISSFGEGQKYADLPINTMRE
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Known secondary structure (DSSP)
B



GGGTT


TTTS


SSSSTTTT

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence MISDLQGVIARGNNQTEKNKIIELDAADNLKQGIVANMIGIVNYIFAKYSYKAYISLEDLSRAYGGAKSG
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Known secondary structure (DSSP) TT

S



TTT






S

S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence YDGRYLPSTSQDEDVDFKEQQNQMLAGLGTYQFFEMQLLKKLQKIQSDNTVLRFVPAFRSADNYRNILRL
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Known secondary structure (DSSP) SSS


TTTSTT

TTS


TTSTT

S


SSTTTTSS


B
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence EETKYKSKPFGVVHFIDPKFTSKKCPVCSKTNVYRDKDDILVCKECGFRSDSQLKERENNIHYIHNGDDN
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Known secondary structure (DSSP)
SSSS
TT

TTSSSS
TTT

S

TTS
TTT

BTT
TTS

GGGGGG

S
 .........1200.......
Sequence GAYHIALKSVENLIQMK
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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