PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c8c0jA_

Fold library id	PDB Header	Molecule	Title
c8c0jA_	3.38	PDB header: hydrolase	Chain: A: PDB Molecule: n-acetylmuramoyl-l-alanine amidase;

Links to external resources
Added to library: Sat Jun 17 13:30:52 2023

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D K I V I A I D A G H G G Q D P G A I G P G G T R E K N V T I A I A R K L R T L L N A D P M F K G V L T R D G D Y F I S V M G R S D V A R K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S B T T B
B
T T
B S T T S
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q N A N F L V S I H A D A A P N R S A T G A S V W V L S N D P Y L S Q A V L D L Q F G H S Q R V G Y D V A T N M L G Q L E R I G S L H K R R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S S T T
B
S
B S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200

Sequence P E H A S L G V L R S P D I P S V L V E T G F I S N H G E E R L L A S D E Y Q Q R L A E A I Y Q G L R N Y F Q A H P L Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S S
S S S
T T S T
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	K	I	V	I	A	I	D	A	G	H	G	G	Q	D	P	G	A	I	G	P	G	G	T	R	E	K	N	V	T	I	A	I	A	R	K	L	R	T	L	L	N	A	D	P	M	F	K	G	V	L	T	R	D	G	D	Y	F	I	S	V	M	G	R	S	D	V	A	R	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	B	T	T	B				B		T	T			B																			S	T	T						S			S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	N	A	N	F	L	V	S	I	H	A	D	A	A	P	N	R	S	A	T	G	A	S	V	W	V	L	S	N	D	P	Y	L	S	Q	A	V	L	D	L	Q	F	G	H	S	Q	R	V	G	Y	D	V	A	T	N	M	L	G	Q	L	E	R	I	G	S	L	H	K	R	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T		S											S	S	T	T				B																																										S		B	S		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Sequence	P	E	H	A	S	L	G	V	L	R	S	P	D	I	P	S	V	L	V	E	T	G	F	I	S	N	H	G	E	E	R	L	L	A	S	D	E	Y	Q	Q	R	L	A	E	A	I	Y	Q	G	L	R	N	Y	F	Q	A	H	P	L	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	T	T	S	S		S	S	S										T	T	S								T																							S