PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c8asbA_

Fold library id	PDB Header	Molecule	Title
c8asbA_	3.60	PDB header: viral protein	Chain: A: PDB Molecule: rna-dependent rna-polymerase l protein;

Links to external resources
Added to library: Sat Jan 21 12:43:45 2023

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M N L E V L C G R I N V E N G L S L G E P G L Y D Q I Y D R P G L P D L D V T V D A T G V T V D I G A V P D S A S Q L G S S I N A G L I T I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T
S S
S
S S
T T S
S S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q L S E A Y K I N H D F T F S G L S K T T D R R L S E V F P I T H D G S D G M T P A V I H T R L D G T I V V V E F S T T R S H N I G G L E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T G G G T T T T S
S
S S S
S
S B
T T T T
S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A Y R T K I E K Y R D P I S R R V D I M E N P R V F F G V I V V S S G G V L S N M P L T Q D E A E E L M Y R F C I A N E I Y T K A R S M D A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S S
S S S S
T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence D I E L Q K S E E E L E A I S R A L S F F S L F E P N I E R V E G T F P N S E I K M L E Q F L S T P A D V D F I T K T L K A K E V E A Y A D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S S
S T T
T S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence L C D S H Y L K P E K T I Q E R L E I N R C E A I D K T Q D L L A G L H A R S N K Q T S L N R G T V K L P P W L P K P S S E S I S G F G S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
T S
S
S B
S
S
T T T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence M D H G A Y G E L W A K C L L D V S L G N V E G V V S D P A K E L D I A I S D Y R R F K P A L S S S A R Q E F S L Q G V E G K K W K R M A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
S B T T B
T T
T T T T T T T T T T S

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence N Q K K E K E S H E T L S P F L D V E D I G D F L T F N N L L T D S R Y G D E S I Q R A V S I L L E K A S A M Q D T E L T H A L N D S F K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T S
S
S S S B
T T
T G G G
S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence N L S S N V V Q W S L W V S C L A Q E L A S A L K Q H C R A G E F I I K K L K F W P I Y V I I K P T K S S S H I F Y S L G I R K A D V T R R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S B T T
T T
S S S
S S S
T T T

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence L T G R V F S D T I D A G E W E L T E F K S L K T C K L T N L V N L P C T M L N S I A F W R E K L G V A P W L V R K P C S E L R E Q V G L T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
B
S S
T T T T
T T S

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence F L I S L E D K S K T E E I I T L T R Y T Q M E G F V S P P M L P K P Q K M L G K L D G P L R T K L Q V Y L L R K H L D C M V R I A S Q P F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G B
S S S
G G G G G T T T
S
S S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence S L I P R E G R V E W G G T F H A I S G R S T N L E N M V N S W Y I G Y Y K N K E E S T E L N A L G E M Y K K I V E M E E D K P S S P E F L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S
B
S S S
B
T T G G G G S
S
G G G T T G G G T T T T
S
G G G T

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence G W G D T D S P K K H E F S R S F L R A A C S S L E R E I A Q R H G R Q W K Q N L E E R V L R E I G T K N I L D L A S M K A T S N F S K D W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S S
T T
T T
B S G G G
S S
G G G

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence E L Y S E V Q T K E Y H R S K L L E K M A T L I E K G V M W Y I D A V G Q A W K A V L D D G C M R I C L F K K N Q H G G L R E I Y V M D A N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S B T T T S S S S
T T
B T T S
S S S

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence A R L V Q F G V E T M A R C V C E L S P H E T V A N P R L K N S I I E N H G L K S A R S L G P G S I N I N S S N D A K K W N Q G H Y T T K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T B
S S
G G G G G T
S S
B S S S
T T

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence A L V L C W F M P A K F H R F I W A A I S M F R R K K M M V D L R F L A H L S S K S E S R S S D P F R E A M T D A F H G N R D V S W M D K G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G G G G S
T
S
S S T T S S
S S
T T

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . . . . . . . 1090 . . . . . . . . . 1100 . . . . . . . . . 1110 . . . . . . . . . 1120

Sequence R T Y I K T E T G M M Q G I L H F T S S L L H S C V Q S F Y K S Y F V S K L K E G Y M G E S I S G V V D V I E G S D D S A I M I S I R P K S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B S
S S
T T T T
S S S
S S
S S

. . . . . . . . . 1130 . . . . . . . . . 1140 . . . . . . . . . 1150 . . . . . . . . . 1160 . . . . . . . . . 1170 . . . . . . . . . 1180 . . . . . . . . . 1190

Sequence D M D E V R S R F F V A N L L H S V K F L N P L F G I Y S S E K S T V N T V Y C V E Y N S E F H F H R H L V R P T L R W I A A S H Q I S E T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T G G G G T
B
T T
T S S S
S S
T T S S

. . . . . . . . . 1200 . . . . . . . . . 1210 . . . . . . . . . 1220 . . . . . . . . . 1230 . . . . . . . . . 1240 . . . . . . . . . 1250 . . . . . . . . . 1260

Sequence E A L A S R Q E D Y S N L L T Q C L E G G A S F S L T Y L I Q C A Q L L H H Y M L L G L C L H P L F G T F M G M L I S D P D P A L G F F L M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S B S T T
T T T T T
G G G
G G G T

. . . . . . . . . 1270 . . . . . . . . . 1280 . . . . . . . . . 1290 . . . . . . . . . 1300 . . . . . . . . . 1310 . . . . . . . . . 1320 . . . . . . . . . 1330

Sequence D N P A F A G G A G F R F N L W R A C K T T D L G R K Y A Y Y F N E I S V M V Y W G D R K K Y Q A L L N R M G L P E D W V E Q I D E N P G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T T T S
S T
S G G G T
S
G G G

. . . . . . . . . 1340 . . . . . . . . . 1350 . . . . . . . . . 1360 . . . . . . . . . 1370 . . . . . . . . . 1380 . . . . . . . . . 1390 . . . . . . . . . 1400

Sequence L Y R R A A N K K E L L L K L A E K V H S P G V T S S L S K G H V V P R V V A A G V Y L L S R H C F R F S Q K A S L I K L L M M S S I S A M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
S S S T T S
S
T T T T S T T T S S
T T T

. . . . . . . . . 1410 . . . . . . . . . 1420 . . . . . . . . . 1430 . . . . . . . . . 1440 . . . . . . . . . 1450 . . . . . . . . . 1460 . . . . . . . . . 1470

Sequence K H G G S L N P N Q E R M L F P Q A Q E Y D R V C T L L E E V E H L T G K F V E R N I V R S R I D C K A E D L V S E V W F G L K R T K L G P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
T T T T S T T S
S S
S S

. . . . . . . . . 1480 . . . . . . . . . 1490 . . . . . . . . . 1500 . . . . . . . . . 1510 . . . . . . . . . 1520 . . . . . . . . . 1530 . . . . . . . . . 1540

Sequence R L L K E E W D K L R A S F A W L S T D P S E T L R D G P F L S H V Q F R N F I A H V D S R S V R L L G A P T T I S Q V V R M N F F P G F S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S T S S
S S
S B T T

. . . . . . . . . 1550 . . . . . . . . . 1560 . . . . . . . . . 1570 . . . . . . . . . 1580 . . . . . . . . . 1590 . . . . . . . . . 1600 . . . . . . . . . 1610

Sequence L E K S R T M T L C L L S N Y L S S R G G S I L D Q I E R A Q S G T L G G F S K P Q K T F V R P G G G V G Y K G K G V W T G V M E D T H V Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S S
T T
S S
T T T T T S
B S
S S S

. . . . . . . . . 1620 . . . . . . . . . 1630 . . . . . . . . . 1640 . . . . . . . . . 1650 . . . . . . . . . 1660 . . . . . . . . . 1670 . . . . . . . . . 1680

Sequence I L I D G D G T S N W L E E I R L S S D A R L Y D V I E S I R R L C D D L G I N N R V A S A Y R G H C M V R L S G F K I K P A S R T D G C P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B S S
S
S
B
S
S
S S
S T T
T T S S S

. . . . . . . . . 1690 . . . . . . . . . 1700 . . . . . . . . . 1710 . . . . .

Sequence V R I M P D E V K M R V R G D I L N L S V T I Q E G R V M N I L S Y R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S
S S S
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	N	L	E	V	L	C	G	R	I	N	V	E	N	G	L	S	L	G	E	P	G	L	Y	D	Q	I	Y	D	R	P	G	L	P	D	L	D	V	T	V	D	A	T	G	V	T	V	D	I	G	A	V	P	D	S	A	S	Q	L	G	S	S	I	N	A	G	L	I	T	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S						T					S	S													S														S	S													T	T	S			S	S				S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	L	S	E	A	Y	K	I	N	H	D	F	T	F	S	G	L	S	K	T	T	D	R	R	L	S	E	V	F	P	I	T	H	D	G	S	D	G	M	T	P	A	V	I	H	T	R	L	D	G	T	I	V	V	V	E	F	S	T	T	R	S	H	N	I	G	G	L	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	T	T	G	G	G						T	T	T	T	S												S				S	S	S			S				S	B				T	T	T	T													S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	Y	R	T	K	I	E	K	Y	R	D	P	I	S	R	R	V	D	I	M	E	N	P	R	V	F	F	G	V	I	V	V	S	S	G	G	V	L	S	N	M	P	L	T	Q	D	E	A	E	E	L	M	Y	R	F	C	I	A	N	E	I	Y	T	K	A	R	S	M	D	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T	S	S	S												S	S					S	S																									T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	D	I	E	L	Q	K	S	E	E	E	L	E	A	I	S	R	A	L	S	F	F	S	L	F	E	P	N	I	E	R	V	E	G	T	F	P	N	S	E	I	K	M	L	E	Q	F	L	S	T	P	A	D	V	D	F	I	T	K	T	L	K	A	K	E	V	E	A	Y	A	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S			S																S												S	T	T			T									S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	L	C	D	S	H	Y	L	K	P	E	K	T	I	Q	E	R	L	E	I	N	R	C	E	A	I	D	K	T	Q	D	L	L	A	G	L	H	A	R	S	N	K	Q	T	S	L	N	R	G	T	V	K	L	P	P	W	L	P	K	P	S	S	E	S	I	S	G	F	G	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T		S	S																													T	S				S						S	B		S									S						T	T	T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	M	D	H	G	A	Y	G	E	L	W	A	K	C	L	L	D	V	S	L	G	N	V	E	G	V	V	S	D	P	A	K	E	L	D	I	A	I	S	D	Y	R	R	F	K	P	A	L	S	S	S	A	R	Q	E	F	S	L	Q	G	V	E	G	K	K	W	K	R	M	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S																	S		S	B	T	T	B											T	T																				T	T	T	T	T	T	T	T	T	T	S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	N	Q	K	K	E	K	E	S	H	E	T	L	S	P	F	L	D	V	E	D	I	G	D	F	L	T	F	N	N	L	L	T	D	S	R	Y	G	D	E	S	I	Q	R	A	V	S	I	L	L	E	K	A	S	A	M	Q	D	T	E	L	T	H	A	L	N	D	S	F	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T					T	T	S											S			S	S	S	B				T	T															T	G	G	G		S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	N	L	S	S	N	V	V	Q	W	S	L	W	V	S	C	L	A	Q	E	L	A	S	A	L	K	Q	H	C	R	A	G	E	F	I	I	K	K	L	K	F	W	P	I	Y	V	I	I	K	P	T	K	S	S	S	H	I	F	Y	S	L	G	I	R	K	A	D	V	T	R	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	B																				T	T					T	T								S	S	S											S	S	S										T	T	T
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	L	T	G	R	V	F	S	D	T	I	D	A	G	E	W	E	L	T	E	F	K	S	L	K	T	C	K	L	T	N	L	V	N	L	P	C	T	M	L	N	S	I	A	F	W	R	E	K	L	G	V	A	P	W	L	V	R	K	P	C	S	E	L	R	E	Q	V	G	L	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S		B							S	S																			T															T	T	T			T	T	S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	F	L	I	S	L	E	D	K	S	K	T	E	E	I	I	T	L	T	R	Y	T	Q	M	E	G	F	V	S	P	P	M	L	P	K	P	Q	K	M	L	G	K	L	D	G	P	L	R	T	K	L	Q	V	Y	L	L	R	K	H	L	D	C	M	V	R	I	A	S	Q	P	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																							G	G	G	G	B		S	S	S				G	G	G	G	G	T	T	T		S				S																				S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	S	L	I	P	R	E	G	R	V	E	W	G	G	T	F	H	A	I	S	G	R	S	T	N	L	E	N	M	V	N	S	W	Y	I	G	Y	Y	K	N	K	E	E	S	T	E	L	N	A	L	G	E	M	Y	K	K	I	V	E	M	E	E	D	K	P	S	S	P	E	F	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S	S					S		B		S	S	S			B										T	T	G	G	G	G	S		S						G	G	G	T	T	G	G	G						T	T	T	T			S		G	G	G	T
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	G	W	G	D	T	D	S	P	K	K	H	E	F	S	R	S	F	L	R	A	A	C	S	S	L	E	R	E	I	A	Q	R	H	G	R	Q	W	K	Q	N	L	E	E	R	V	L	R	E	I	G	T	K	N	I	L	D	L	A	S	M	K	A	T	S	N	F	S	K	D	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S			S	S			T	T																								T	T																	B	S	G	G	G			S	S							G	G	G
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	E	L	Y	S	E	V	Q	T	K	E	Y	H	R	S	K	L	L	E	K	M	A	T	L	I	E	K	G	V	M	W	Y	I	D	A	V	G	Q	A	W	K	A	V	L	D	D	G	C	M	R	I	C	L	F	K	K	N	Q	H	G	G	L	R	E	I	Y	V	M	D	A	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	B	T	T	T	S	S	S	S																	T	T			B	T															T	S											S	S	S
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	A	R	L	V	Q	F	G	V	E	T	M	A	R	C	V	C	E	L	S	P	H	E	T	V	A	N	P	R	L	K	N	S	I	I	E	N	H	G	L	K	S	A	R	S	L	G	P	G	S	I	N	I	N	S	S	N	D	A	K	K	W	N	Q	G	H	Y	T	T	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T	T	B		S	S		G	G	G	G	G	T															S	S										B	S	S					S		T	T
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	A	L	V	L	C	W	F	M	P	A	K	F	H	R	F	I	W	A	A	I	S	M	F	R	R	K	K	M	M	V	D	L	R	F	L	A	H	L	S	S	K	S	E	S	R	S	S	D	P	F	R	E	A	M	T	D	A	F	H	G	N	R	D	V	S	W	M	D	K	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S		G	G	G										G	G	G	S															T			S				S	S											T	T	S	S			S	S			T	T
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Sequence	R	T	Y	I	K	T	E	T	G	M	M	Q	G	I	L	H	F	T	S	S	L	L	H	S	C	V	Q	S	F	Y	K	S	Y	F	V	S	K	L	K	E	G	Y	M	G	E	S	I	S	G	V	V	D	V	I	E	G	S	D	D	S	A	I	M	I	S	I	R	P	K	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B	S						S	S			T	T	T	T																											S	S	S													S	S											S	S
	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
Sequence	D	M	D	E	V	R	S	R	F	F	V	A	N	L	L	H	S	V	K	F	L	N	P	L	F	G	I	Y	S	S	E	K	S	T	V	N	T	V	Y	C	V	E	Y	N	S	E	F	H	F	H	R	H	L	V	R	P	T	L	R	W	I	A	A	S	H	Q	I	S	E	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T					G	G	G	G	T			B		T	T							T				S	S	S					S	S											T	T	S	S
	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260
Sequence	E	A	L	A	S	R	Q	E	D	Y	S	N	L	L	T	Q	C	L	E	G	G	A	S	F	S	L	T	Y	L	I	Q	C	A	Q	L	L	H	H	Y	M	L	L	G	L	C	L	H	P	L	F	G	T	F	M	G	M	L	I	S	D	P	D	P	A	L	G	F	F	L	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	B	S																	T	T																					T	T	T	T	T		G	G	G													G	G	G	T
	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330
Sequence	D	N	P	A	F	A	G	G	A	G	F	R	F	N	L	W	R	A	C	K	T	T	D	L	G	R	K	Y	A	Y	Y	F	N	E	I	S	V	M	V	Y	W	G	D	R	K	K	Y	Q	A	L	L	N	R	M	G	L	P	E	D	W	V	E	Q	I	D	E	N	P	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	T	T	T	S													S	T																		S	G	G	G											T			S										G	G	G
	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400
Sequence	L	Y	R	R	A	A	N	K	K	E	L	L	L	K	L	A	E	K	V	H	S	P	G	V	T	S	S	L	S	K	G	H	V	V	P	R	V	V	A	A	G	V	Y	L	L	S	R	H	C	F	R	F	S	Q	K	A	S	L	I	K	L	L	M	M	S	S	I	S	A	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S				S													S	S					T	T	S			S								T	T	T	T	S	T	T	T	S	S																				T	T	T
	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470
Sequence	K	H	G	G	S	L	N	P	N	Q	E	R	M	L	F	P	Q	A	Q	E	Y	D	R	V	C	T	L	L	E	E	V	E	H	L	T	G	K	F	V	E	R	N	I	V	R	S	R	I	D	C	K	A	E	D	L	V	S	E	V	W	F	G	L	K	R	T	K	L	G	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T			S												T	T									T	T	S	T	T	S		S	S																																	S	S
	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.	.	.	.	.	1540
Sequence	R	L	L	K	E	E	W	D	K	L	R	A	S	F	A	W	L	S	T	D	P	S	E	T	L	R	D	G	P	F	L	S	H	V	Q	F	R	N	F	I	A	H	V	D	S	R	S	V	R	L	L	G	A	P	T	T	I	S	Q	V	V	R	M	N	F	F	P	G	F	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T			S	S							T	S	S		S	S																																	S	B	T	T
	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610
Sequence	L	E	K	S	R	T	M	T	L	C	L	L	S	N	Y	L	S	S	R	G	G	S	I	L	D	Q	I	E	R	A	Q	S	G	T	L	G	G	F	S	K	P	Q	K	T	F	V	R	P	G	G	G	V	G	Y	K	G	K	G	V	W	T	G	V	M	E	D	T	H	V	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T		S	S									T	T								S	S							T	T	T	T	T	S			B	S								S	S	S
	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.	.	.	.	.	.	.	.	1640	.	.	.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.	.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680
Sequence	I	L	I	D	G	D	G	T	S	N	W	L	E	E	I	R	L	S	S	D	A	R	L	Y	D	V	I	E	S	I	R	R	L	C	D	D	L	G	I	N	N	R	V	A	S	A	Y	R	G	H	C	M	V	R	L	S	G	F	K	I	K	P	A	S	R	T	D	G	C	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						B	S	S										S			S																			B			S			S			S	S		S					T	T					T	T	S	S	S
	.	.	.	.	.	.	.	.	.	1690	.	.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.
Sequence	V	R	I	M	P	D	E	V	K	M	R	V	R	G	D	I	L	N	L	S	V	T	I	Q	E	G	R	V	M	N	I	L	S	Y	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S						S	S	S								S	S	S					S	S