PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c8a0aA_

Fold library id	PDB Header	Molecule	Title
c8a0aA_	2.90	PDB header: dna binding protein	Chain: A: PDB Molecule: spbeta prophage-derived uncharacterized protein yopr;

Links to external resources
Added to library: Sat Jun 17 13:23:22 2023

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G F N S E I K E K Y L D T L S E G M V M Q M R P I F A K A E I T E T L Y N K D I Y D F T S M Q I L E L I R S F D Q T T I G S V R R T L A L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S T S
G G G
T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S L Y I D W A I S Y K L S K G L T N L A R T I S E E E L Y E C L G D K K L Y I T Y S E L E E M E N Q L V N Y Q S K A V L R L L F E G V S G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S S S S
G G G G
T T G G G G G S T T T
S
T T
G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A H S E L L S L T K K Q V E D A M L N G N V L T L Y D S K H G E R K L K V S S E C L V I A L N A A Q E T K Y K L K N G K A K G Q T K E V F L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G S
B T T T T T T T
T T
G G G G T
S S
B

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence V E N D Y V V K T K R T S N K G D G Q A S K F V I T N L I T D I S E F F K I N F L T P N T I V R S G H L Y R A Y Q L Y K E K G V I D N S V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S B S S
B G G G
S S
T
S
S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320

Sequence Y Q I I D D F N L R V K S K Y R A V Y S M Q D Y I N E E E V N K Y Y A E E L G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S T T T S S T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
Disclaimer

Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	F	N	S	E	I	K	E	K	Y	L	D	T	L	S	E	G	M	V	M	Q	M	R	P	I	F	A	K	A	E	I	T	E	T	L	Y	N	K	D	I	Y	D	F	T	S	M	Q	I	L	E	L	I	R	S	F	D	Q	T	T	I	G	S	V	R	R	T	L	A	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T											S		S																					T	S		G	G	G													T			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	L	Y	I	D	W	A	I	S	Y	K	L	S	K	G	L	T	N	L	A	R	T	I	S	E	E	E	L	Y	E	C	L	G	D	K	K	L	Y	I	T	Y	S	E	L	E	E	M	E	N	Q	L	V	N	Y	Q	S	K	A	V	L	R	L	L	F	E	G	V	S	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T		S	S	S	S	S		G	G	G	G			T	T	G	G	G	G	G	S	T	T	T			S																											T	T				G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	H	S	E	L	L	S	L	T	K	K	Q	V	E	D	A	M	L	N	G	N	V	L	T	L	Y	D	S	K	H	G	E	R	K	L	K	V	S	S	E	C	L	V	I	A	L	N	A	A	Q	E	T	K	Y	K	L	K	N	G	K	A	K	G	Q	T	K	E	V	F	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G					S		B									T	T	T	T							T	T	T																			T	T						G	G	G	G	T			S	S						B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	V	E	N	D	Y	V	V	K	T	K	R	T	S	N	K	G	D	G	Q	A	S	K	F	V	I	T	N	L	I	T	D	I	S	E	F	F	K	I	N	F	L	T	P	N	T	I	V	R	S	G	H	L	Y	R	A	Y	Q	L	Y	K	E	K	G	V	I	D	N	S	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	B	S	S			B	G	G	G				S	S																			T		S																								S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Sequence	Y	Q	I	I	D	D	F	N	L	R	V	K	S	K	Y	R	A	V	Y	S	M	Q	D	Y	I	N	E	E	E	V	N	K	Y	Y	A	E	E	L	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T				S	S									T	T	T	S	S													T