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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c7z88A_

Fold library idPDB HeaderMoleculeTitle
c7z88A_3.33PDB header: dna binding proteinChain: A: PDB Molecule: dna-dependent protein kinase catalytic subunit;


Added to library: Sat Jan 21 13:36:47 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GVRCSLLRLQETLSAADRCGAALAGHQLIRGLGQECVLSSSPAVLALQTSLVFSRDFGLLVFVRKSLNSI
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Known secondary structure (DSSP)

STTS
SSTT




SSSSTTS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence EFRECREEILKFLCIFLEKMGQKIAPYSVEIKNTCTSVYTKDRAAKCKIPALDLLIKLLQTFRSSRLMDE
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Known secondary structure (DSSP) STTS
S

T


TT
SSTTTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence FKIGELFSKFYGELALKKKIPDTVLEKVYELLGLLGEVHPSEMINNAENLFRAFLGELKTQMTSAVREPK
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Known secondary structure (DSSP) S
TTSSSS
S
SSSS
SSTTSTS
SSS


 .........220.........230.........240.........250.........260.........270.........280
Sequence LPVLAGCLKGLSSLLCNFTKSMEEDPQTSREIFNFVLKAIRPQIDLKRYAVPSAGLRLFALHASQFSTCL
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Known secondary structure (DSSP) TTS


TTTSTTS

SS
S

SGGGS
GGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence LDNYVSLFEVLLKWCAHTNVELKKAALSALESFLKQVSNMVAKNAEMHKNKLQYFMEQFYGIIRNVDSNN
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Known secondary structure (DSSP) GSSTS

SSTT
TTTTS



S
 .........360.........370.........380.........390.........400.........410.........420
Sequence KELSIAIRGYGLFAGPCKVINAKDVDFMYVELIQRCKQMFLTQTDTGDDRVYQMPSFLQSVASVLLYLDT
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Known secondary structure (DSSP) TTTTTTSSTTTTTTTSSSSSTTTTT
SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence VPEVYTPVLEHLVVMQIDSFPQYSPKMQLVCCRAIVKVFLALAAKGPVLRNCISTVVHQGLIRICSKPKW
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Known secondary structure (DSSP)


SSTSTTS
TTTTTS
TT



 .........500.........510.........520.........530.........540.........550.........560
Sequence KVPTYKDYVDLFRHLLSSDQMMDSILASLNHLLYDEFVKSVLKIVEKLDLTLEIQTMIPTSDPAANLHPA
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Known secondary structure (DSSP)



STTTTTTTTTSTT


SS


B







SSSSTT
SBS
 .........570.........580.........590.........600.........610.........620.........630
Sequence KPKDFSAFINLVEFCREILPEKQAEFFEPWVYSFSYELILQSTRLPLISGFYKLLSITVRNAKKIKYFEG
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Known secondary structure (DSSP) SSSSS
SSSSTTTSTT
TTS




 .........640.........650.........660.........670.........680.........690.........700
Sequence KYSCFALFVKFGKEVAVKMKQYKDELLASCLTFLLSLPHNIIELDVRAYVPALQMAFKLGLSYTPLAEVG
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Known secondary structure (DSSP)
GGG

TTS

SS

TTGGGSSTTTTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence LNALEEWSIYIDRHVMQPYYKDILPCLDGYLKEVSALSRAAQKGFNKVVLKHLKKTEAISLEEIRIRVVQ
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Known secondary structure (DSSP) TS
TTTSSTTSTTTSTTSSTT




S

SS




 .........780.........790.........800.........810.........820.........830.........840
Sequence MLGSLGGQINKNLLTVTSSDEMMKSYVAWDREKRLSFAVPFREMKPVIFLDVFLPRVTELALTASDRQTK
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Known secondary structure (DSSP) TTTTTGGGGS
S
S
SSTTTTSS
SSSS





SS


SGGGS
S
 .........850.........860.........870.........880.........890.........900.........910
Sequence VAACELLHSMVMFMLGKATQPPMYQLYKRTFPVLLRLACDVDQVTRQLYEPLVMQLIHWFTNNKKFESQD
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Known secondary structure (DSSP) TT



T
SSSTTSSGGGTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence TVALLEAILDGIVDPVDSTLRDFCGRCIREFLKWSIKQITPQQQEKSPVNTKSLFKRLYSLALHPNAFKR
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Known secondary structure (DSSP) S
SS
S
TTTTTS
SSSS
S
TTT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LGASLAFNNIYREFREEESLVEQFVFEALVIYMESLALAHADEKSLGTIQQCCDAIDHLCRIIEKKHVSL
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Known secondary structure (DSSP) SSSSSS

SSTTTTTSGGGTTSS
GGGTS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence NKAKKRRLPRGFPPSASLCLLDLVKWLLAHCGRPQTECRHKSIELFYKFVPLLPGNRSPNLWLKDVLKEE
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Known secondary structure (DSSP)
S






TTS


S

SSTSS
SSSTTSTT


S
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence GVSFLINTFEGGGCGLLYLRGPFSLQATLCWLDLLLAALECYNTFIGERTVGALQVLGTEAQSSLLKAVA
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Known secondary structure (DSSP)
T
S




TTSS



TTTTS

SGGGT
S
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence FFLESIAMSPQEGERYNYSKCTVVVRIMEFTTTLLNTSPEGWKLLKKDLCNTHLMRVLVQTLCEPASIGF
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Known secondary structure (DSSP) SS


TTTT
TT
GGGS
TTTTTTTS
GGGGT
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence NIGDVQVMAHLPDVCVNLMKALKMSPYKDILETHLREKITAQSIEELCAVNLYGPDAQVDRSRLAAVVSA
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Known secondary structure (DSSP)
TT
SSSTTS
S
S

SSS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence CKQLHRAGLLHNILPSQSTDLHHSVGTELLSLVYKGIAPGPSLDLSCKQLASGLLELAFAFGGLCERLVS
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Known secondary structure (DSSP) TTTTSSSS


SS
SS
SS





SS

 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence LLLNPAVLSTAHFSHGEYFYSLFSETINTELLKNLDLAVLELMQSSVDNTKMVSAVLNGMLDQSFRERAN
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Known secondary structure (DSSP)










SS
STTSTTTTTTTSS
TT
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence QKHQGLKLATTILQHWKKCDSWWAKDSPLETKMAVLALLAKILQIDSSVSFNTSHGSFPEVFTTYISLLA
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Known secondary structure (DSSP) TTTTTTTTTTTTSTTS
TTS
TTTTSTTSS
TT
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence DTKLDLHLKGQAVTLLPFFTSLTGGSLEELRRVLEQLIVAHFPMQSREFPPGTPRFNNYVDCMKKFLDAL
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Known secondary structure (DSSP)
TTS
TTSSS

S
SSS

S
TTSTT
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence ELSQSPMLLELMTEVLCREQQHVMEELFQSSFRRIARRGSCVTQVGLLESVYEMFRKDDPRLSFTRQSFV
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Known secondary structure (DSSP) S

TTSSS
TTTT

S




 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence DRSLLTLLWHCSLDALREFFSTIVVDAIDVLKSRFTKLNESTFDTQITKKMGYYKILDVMYSRLPKDDVH
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Known secondary structure (DSSP) TT
S
TT

S



TT
S
S
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence AKESKINQVFHGSCITEGNELTKTLIKLCYDAFTENMAGENQLLERRRLYHCAAYNCAISVICCVFNELK
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Known secondary structure (DSSP) SS
SSSTTSSSTTS
S
S
TSSSS

SS

S
TTS

SST
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence FYQGFLFSEKPEKNLLIFENLIDLKRRYNFPVEVSTLSEEMSQFDFSTGELEMDELNRHECMAPLTALVK
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Known secondary structure (DSSP) SSS


GGGT

S
SSS




S



SSTT




SSSS
SSS
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence HMHRSLRDLPSWMKFLHGKLGNPIVPLNIRLFLAKLVINTEEVFRPYAKHWLSPLLQLAASENNGGEGIH
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Known secondary structure (DSSP) TT



TTTSTTS
TGGGGSTTTTTSSSS
SSTT

 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence YMVVEIVATILSWTGLATPTGVPKDEVLANRLLNFLMKHVFHPKRAVFRHNLEIIKTLVECWKDCLSIPY
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Known secondary structure (DSSP) S
SSS
S
S
S


SSS
SS




 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence RLIFEKFSGKDPNSKDNSVGIQLLGIVMANDLPPYDPQCGIQSSEYFQALVNNMSFVRYKEVYAAAAEVL
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Known secondary structure (DSSP) SS


SSSSTTTTT




TTTSS
T
TTS
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence GLILRYVMERKNILEESLCELVAKQLKQHQNTMEDKFIVCLNKVTKSFPPLADRFMNAVFFLLPKFHGVL
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Known secondary structure (DSSP) TT
TTTT
TT

TTSTTTGGG

S
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence KTLCLEVVLCRVEGMTELYFQLKSKDFVQVMRHRDDERQKVCLDIIYKMMPKLKPVELRELLNPVVEFVS
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Known secondary structure (DSSP) TT
TT
S

TTTTSS
SGGG

TTTT
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence HPSTTCREQMYNILMWIHDNYRDPESETDNDSQEIFKLAKDVLIQGLIDENPGLQLIIRNFWSHETRLPS
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Known secondary structure (DSSP)
SST


TT



STTTT
SSTTSTTTS
S
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence NTLDRLLALNSLYSPKIEVHFLSLATNFLLEMTSMSPDYPNPMFEHPQIKHSSLITPLQAVAQRDPIIAK
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Known secondary structure (DSSP) SSSGGG

TT

TTTTTTSS

S
TT
S




SSTTTTTTS
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence QLFSSLFSGILKEMDKFKTLSEKNNITQKLLQDFNRFLNTTFSFFPPFVSCIQDISCQHAALLSLDPAAV
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Known secondary structure (DSSP) TSSSS

SS

SSS
SGGG


 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence SAGCLASLQQPVGIRLLEEALLRPPDVLRWVELAKLYRSIGEYDVLRGIFTSEIGTKQITQSALLAEARS
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Known secondary structure (DSSP) T
S


TTS

TTTTTTS
SSSTT
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence DYSEAAKQYDEALNKQDWVDGEPTEAEKDFWELASLDCYNHLAEWKSLEYCSTASIDSENPPDLNKIWSE
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Known secondary structure (DSSP)
TTS



TT



TT
TTS
SS


STTTTSS
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence PFYQETYLPYMIRSKLKLLLQGEADQSLLTFIDKAMHGELQKAILELHYSQELSLLYLLQDDVDRAKYYI
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Known secondary structure (DSSP) T

TT
TSSSST
STT
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence QNGIQSFMQNYSSIDVLLHQSRLTKLQSVQALTEIQEFISFISKQGNLSSQVPLKRLLNTWTNRYPDAKM
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Known secondary structure (DSSP) TTS
TT
TTTT
GGGGT
S



TTS
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence DPMNIWDDIITNRCFFLSKIEEKLTDISSLIRSCKFSMKMKMIDSARKQNNFSLAMKLLKELHKESKTRD
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Known secondary structure (DSSP) S
T



TT
TTTTSS
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence DWLVSWVQSYCRLSHCRSRSQGCSEQVLTVLKTVSLLDENNVSSYLSKNILAFRDQNILLGTTYRIIANA
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Known secondary structure (DSSP) TSSS
TTTSTTSSS
SSS
 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence LSSEPACLAEIEEDKARRILELDSEKVIAGLYQRAFQHLSEAVQAAAGVIDAYMTLADFCDQQLRKEEEQ
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Known secondary structure (DSSP) TS
SSSTTTS

T


SS


T

 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence AYPALVVEKMLKALKLNSNEARLKFPRLLQIIERYPEETLSLMTKEISSVPCWQFISWISHMVALLDKDQ
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Known secondary structure (DSSP)
TS

SGGG

STTSSSSS


SSGGGTTSTT
 .........3020.........3030.........3040.........3050.........3060.........3070.........3080
Sequence AVAVQHSVEEITDNYPQAIVYPFIISSESYSFKDTSTGHKNKEFVARIKSKLDQGGVIQDFINALDQLSN
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Known secondary structure (DSSP) GGGGSSTTTTTTTTTTS


S
TTTTSSSS
 .........3090.........3100.........3110.........3120.........3130.........3140.........3150
Sequence PELLFKDWSNDVRAELAKTPVNKKNIEKMYERMYAALGDPKAPGLGAFRRKFIQTFGKEFDKHFGKGGSK
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Known secondary structure (DSSP) SSS
TT

STTSSSTT


TTTTST
 .........3160.........3170.........3180.........3190.........3200.........3210.........3220
Sequence LLRMKLSDFNDITNMLLLKMNKDSKPPGNLKECSPWMSDFKVEFLRNELEIPGQYDGRGKPLPEYHVRIA
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Known secondary structure (DSSP) TTT



S
TS
S


SGGGST



S
S




TT


SSS


TTTS



 .........3230.........3240.........3250.........3260.........3270.........3280.........3290
Sequence GFDERVTVMASLRRPKRIIIRGHDEREHPFLVKGGEDLRQDQRVEQLFQVMNGILAQDSACSQRALQLRT
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Known secondary structure (DSSP)


S

B



SS



B
TTSSB

SS

STT




 .........3300.........3310.........3320.........3330.........3340.........3350.........3360
Sequence YSVVPMTSRLGLIEWLENTVTLKDLLLNTMSQEEKAAYLSDPRAPPCEYKDWLTKMSGKHDVGAYMLMYK
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Known secondary structure (DSSP)

TT

SSS
S
TTSSSSSTTTT
 .........3370.........3380.........3390.........3400.........3410.........3420.........3430
Sequence GANRTETVTSFRKRESKVPADLLKRAFVRMSTSPEAFLALRSHFASSHALICISHWILGIGDRHLNNFMV
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Known secondary structure (DSSP) S

S
STTS
SSTT




GGG
 .........3440.........3450.........3460.........3470.........3480.........3490.........3500
Sequence AMETGGVIGIDFGHAFGSATQFLPVPELMPFRLTRQFINLMLPMKETGLMYSIMVHALRAFRSDPGLLTN
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Known secondary structure (DSSP) TTT




S

SS
TTTTSSS



SS


TTS
TTSSTTTS
SS
 .........3510.........3520.........3530.........3540.........3550.........3560.........3570
Sequence TMDVFVKEPYPRQKICYAKRKLAGANPAVITCDELLLGHEKAPAFRDYVAVARGSKDHNIRAQEPESGLS
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Known secondary structure (DSSP) S


TTSS


TT
TT

SSS
TTTTS
SS


 .........3580.........3590.........
Sequence EETQVKCLMDQATDPNILGRTWEGWEPWM
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Known secondary structure (DSSP) T
TSS
GGG
TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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