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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c7z87A_

Fold library idPDB HeaderMoleculeTitle
c7z87A_2.91PDB header: dna binding proteinChain: A: PDB Molecule: dna-dependent protein kinase catalytic subunit;


Added to library: Sat Jan 21 13:15:33 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GVRCSLLRLQETLSAADRCGAALAGHQLIRGLGQECVLSSSPAVLALQTSLVFSRDFGLLVFVRKSLNSI
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Known secondary structure (DSSP)
TTTSSSTTT


T
SSSSTSS
G
 .........80.........90.........100.........110.........120.........130.........140
Sequence EFRECREEILKFLCIFLEKMGQKIAPYSVEIKNTCTSVYTKDRAAKCKIPALDLLIKLLQTFRSSRLMDE
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Known secondary structure (DSSP) GGS
GGGGGG


TSSST
 .........150.........160.........170.........180.........190.........200.........210
Sequence FKIGELFSKFYGELALKKKIPDTVLEKVYELLGLLGEVHPSEMINNAENLFRAFLGELKTQMTSAVREPK
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Known secondary structure (DSSP) TTTTSS



SSSSSGGGTTTT
SSS


 .........220.........230.........240.........250.........260.........270.........280
Sequence LPVLAGCLKGLSSLLCNFTKSMEEDPQTSREIFNFVLKAIRPQIDLKRYAVPSAGLRLFALHASQFSTCL
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Known secondary structure (DSSP) TSSS


TTT
TTS

S


STTTTTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence LDNYVSLFEVLLKWCAHTNVELKKAALSALESFLKQVSNMVAKNAEMHKNKLQYFMEQFYGIIRNVDSNN
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Known secondary structure (DSSP) TTTS

TTTTTT
S

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence KELSIAIRGYGLFAGPCKVINAKDVDFMYVELIQRCKQMFLTQTDTGDDRVYQMPSFLQSVASVLLYLDT
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Known secondary structure (DSSP) TSSTTTSSS
SSS

TTTTTT
SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence VPEVYTPVLEHLVVMQIDSFPQYSPKMQLVCCRAIVKVFLALAAKGPVLRNCISTVVHQGLIRICSKPVV
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Known secondary structure (DSSP)

SSSTSTTS
TTSTSS
SS


 .........500.........510.........520.........530.........540.........550.........560
Sequence GKWKVPTYKDYVDLFRHLLSSDQMMDSILASESLNHLLYDEFVKSVLKIVEKLDLTDPAANLHPAKPKDF
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Known secondary structure (DSSP)






SGGGTTS
TTTSSS



SS





SSS


S
 .........570.........580.........590.........600.........610.........620.........630
Sequence SAFINLVEFCREILPEKQAEFFEPWVYSFSYELILQSTRLPLISGFYKLLSITVRNAKKIKYFEGEKYSC
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Known secondary structure (DSSP) SSTT
STTSGGGS
TT
SSS





 .........640.........650.........660.........670.........680.........690.........700
Sequence FALFVKFGKEVAVKMKQYKDELLASCLTFLLSLPHNIIELDVRAYVPALQMAFKLGLSYTPLAEVGLNAL
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Known secondary structure (DSSP) GGG

S

SS

TTGGGTTTTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence EEWSIYIDRHVMQPYYKDILPCLDGYLKTSALSDETKNNWEVSALSRAAQKGFNKVVLKHLKKTKNLSSN
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Known secondary structure (DSSP) S
TTTSGGGTGGG



S


SS
SS



TT
SST



 .........780.........790.........800.........810.........820.........830.........840
Sequence EAISLEEIRIRVVQMLGSLGGQINKNLLTVTSSDEMMKSYVAWDREKRLSFAVPFREMKPVIFLDVFLPR
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Known secondary structure (DSSP)



T
STGGGGSS

SSSTTS
S
SS





SS


GGGT
 .........850.........860.........870.........880.........890.........900.........910
Sequence VTELALTASDRQTKVAACELLHSMVMFMLGKATQMPEGGQGAPPMYQLYKRTFPVLLRLACDVDQVTRQL
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Known secondary structure (DSSP) S

SSSS

TTTTS


TSS
 .........920.........930.........940.........950.........960.........970.........980
Sequence YEPLVMQLIHWFTNNKKFESQDTVALLEAILDGIVDPVDSTLRDFCGRCIREFLKWSIKQITPQQQEKSP
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Known secondary structure (DSSP) SSTTTTT
S
SS
SS
TTTTTTST
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence VNTKSLFKRLYSLALHPNAFKRLGASLAFNNIYREFREEESLVEQFVFEALVIYMESLALAHADEKSLGT
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Known secondary structure (DSSP) T
SSS
TTTTTSS
SSTT
TT
S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence IQQCCDAIDHLCRIIEKKHVSLNKAKKRRLPRGFPPSASLCLLDLVKWLLAHCGRPQTECRHKSIELFYK
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Known secondary structure (DSSP) TTTSSS









TTS


S

SS


S
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence FVPLLPGNRSPNLWLKDVLKEEGVSFLINTFEGGGCGLLYLRGPFSLQATLCWLDLLLAALECYNTFIGE
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Known secondary structure (DSSP) SSSSTT



TTTTTTTS



GGGS



TT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence RTVGALQVLGTEAQSSLLKAVAFFLESIAMSPQEGERYNYSKCTVVVRIMEFTTTLLNTSPEGWKLLKKD
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Known secondary structure (DSSP) TSS
STTT

STT

TSSS

SGGGTTT
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence LCNTHLMRVLVQTLCEPASIGFNIGDVQVMAHLPDVCVNLMKALKMSPYKDILETHLREKITAQSIEELC
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Known secondary structure (DSSP) TSSS

TTTT

TT
TTTTSS

SSS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence AVNLYGPDAQVDRSRLAAVVSACKQLHRAGLLHNILPSQSTDLHHSVGTELLSLVYKGIAPGQCLPSLDL
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Known secondary structure (DSSP)
S

SSS
TTTTTTT
S


SSSSS
TTS








 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence SCKQLASGLLELAFAFGGLCERLVSLLLNPAVLSTAVIHFSHGEYFYSLFSETINTELLKNLDLAVLELM
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Known secondary structure (DSSP) S

S












SS
SST
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence QSSVDNTKMVSAVLNGMLDQSFRERANQKHQGLKLATTILQHWKKCDSWWAKDSPLETKMAVLALLAKIL
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Known secondary structure (DSSP) TTTTT
TTTT
STGGG

TTTSTTS
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence QIDSSVSFNTSHGSFPEVFTTYISLLADTKLDLHLKGQAVTLLPFFTSLTGGSLEELRRVLEQLIVAHFP
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Known secondary structure (DSSP) S


TTSTTSSS
SSS
TTGGGTTTS
TTTTTTS
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence MQSREFPPGTPRFNNYVDCMKKFLDALELSQSPMLLELMTEVLCREQQHVMEELFQSSFRRIARRGSCVT
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Known secondary structure (DSSP) SSS

S
TTSS

TTSSS
TTTT

 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence QVGLLESVYEMFRKDDPRLSFTRQSFVDRSLLTLLWHCSLDALREFFSTIVVDAIDVLKSRFTKLNESTF
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Known secondary structure (DSSP) S







TT
T



TT
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence DTQITKKMGYYKILDVMYSRLPKDDVHAKESKINQVFHGSCITEGNELTKTLIKLCYDAFTENMAGENQL
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Known secondary structure (DSSP) TS
SSSSTTTTS

SS
SS


TT

S
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence LERRRLYHCAAYNCAISVICCVFNELKFYQGFLFSEKPEKNLLIFENLIDLKRRYNFPVEVSTLSEEMSQ
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Known secondary structure (DSSP) TTSTT
SSSTT

BGGGTB
SS
S






S


 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence FDFSTGVQELEMDELNRHECMAPLTALVKHMHRSLPRDLPSWMKFLHGKLGNPIVPLNIRLFLAKLVINT
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Known secondary structure (DSSP) T





SSSS
SSSTT




SSS
TTS
T
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence EEVFRPYAKHWLSPLLQLAASENNGGEGIHYMVVEIVATILSWTGLATPTGVPKDEVLANRLLNFLMKHV
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Known secondary structure (DSSP) GGGGGGSS
TTSSTTT
SSSTTSS
S
S
S
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence FHPKRAVFRHNLEIIKTLVECWKDCLSIPYRLIFEKFSGKDPNSKDNSVGIQLLGIVMANDLPPYDPQCG
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Known secondary structure (DSSP)

SS

SS




SS



TT
TTTTT

SS
STTS
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence IQSSEYFQALVNNMSFVRYKEVYAAAAEVLGLILRYVMERKNILEESLCELVAKQLKQHQNTMEDKFIVC
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Known secondary structure (DSSP) S
GGG
TT
TT
TTTT
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence LNKVTKSFPPLADRFMNAVFFLLPKFHGVLKTLCLEVVLCRVEGMTELYFQLKSKDFVQVMRHRDDERQK
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Known secondary structure (DSSP)
GGGGGG

ST
TT
S
ST
SS
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence VCLDIIYKMMPKLKPVELRELLNPVVEFVSHPSTTCREQMYNILMWIHDNYRDPESETDNDSQEIFKLAK
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Known secondary structure (DSSP) GGG

TTTT
S
TT
S

SS


TT
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence DVLIQGLIDENPGLQLIIRNFWSHETRLPSNTLDRLLALNSLYSPKIEVHFLSLATNFLLEMTSMSPDYP
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Known secondary structure (DSSP) GGG
SSTTSTTTS
SSTT

GGGTTSSSSS

S
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence NPMFEHPMRDQEKLSLMYARKGVAEQKREKEIKSELKMKQDAQVDLPDIQIKHSSLITPLQAVAQRDPII
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Known secondary structure (DSSP)
TT






T









STT
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence AKQLFSSLFSGILKEMDKFKTLSEKNNITQKLLQDFNRFLNTTFSFFPPFVSCIQDISCQHAALLSLDPA
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Known secondary structure (DSSP) TTTSS

SS

T
GGG

S
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence AVSAGCLASLQQPVGIRLLEEALLRPPDVLRWVELAKLYRSIGEYDVLRGIFTSEIGTKQITQSALLAEA
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Known secondary structure (DSSP) TT







TTTTTTSS
GGGS

 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence RSDYSEAAKQYDEALNKQDWVDGEPTEAEKDFWELASLDCYNHLAEWKSLEYCSTASIDSENPPDLNKIW
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Known secondary structure (DSSP) TT
T



TT



TT
TTT

SS

TTTTTT
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence SEPFYQETYLPYMIRSKLKLLLQGEADQSLLTFIDKAMHGELQKAILELHYSQELSLLYLLQDDVDRAKY
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Known secondary structure (DSSP) SSGGGTTTTTT



SSSSSTSSTT
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence YIQNGIQSFMQNYSSIDVLLHQSRLTKLQSVQALTEIQEFISFISKQGNLSSQVPLKRLLNTWTNRYPDA
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Known secondary structure (DSSP) TS
TT
TTTTT
TTTTTSST



T
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence KMDPMNIWDDIITNRCFFLSKIEEKLTPDISSLIRSCKFSMKMKMIDSARKQNNFSLAMKLLKELHKESK
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Known secondary structure (DSSP) TTS
T



TT
TTTTTST
 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence TRDDWLVSWVQSYCRLSHCRSRSQGCSEQVLTVLKTVSLLDENNVSSYLSKNILAFRDQNILLGTTYRII
Predicted secondary structure







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Known secondary structure (DSSP) TSTTS
SSST


TTTTTTT
 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence ANALSSEPACLAEIEEDKARRILEEDSEKVIAGLYQRAFQHLSEAVQAAEEAAGVIDAYMTLADFCDQQL
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Known secondary structure (DSSP) STTS
SSS

TTT


TT
 .........3020.........3030.........3040.........3050.........3060.........3070.........3080
Sequence RKEEENASVIDSAELQAYPALVVEKMLKALKLNSNEARLKFPRLLQIIERYPEETLSLMTKEISSVPCWQ
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Known secondary structure (DSSP) TS

STTS

TTTTSS
SSS
TS
GGG
 .........3090.........3100.........3110.........3120.........3130.........3140.........3150
Sequence FISWISHMVALLDKDQAVAVQHSVEEITDNYPQAIVYPFIISSESYSFKDTSTGHKNKEFVARIKSKLDQ
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Known secondary structure (DSSP) GGGGTTTTTSTT
TTTSTTTST




SSSSST
 .........3160.........3170.........3180.........3190.........3200.........3210.........3220
Sequence GGVIQDFINALDQLSNPELLFKDWSNDVRAELAKTPVNKKNIEKMYERMYAALGDPKAPGLGAFRRKFIQ
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Known secondary structure (DSSP) TTTTS
TTTTT
TT

STTT
TS


TT
 .........3230.........3240.........3250.........3260.........3270.........3280.........3290
Sequence TFGKEFDKHFGKGGSKLLRMKLSDFNDITNMLLLKMNKDSKPPGNLKECSPWMSDFKVEFLRNELEIPGQ
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Known secondary structure (DSSP) SSTGGG



S

S





SGGGSTTTTT



S
S




SS
 .........3300.........3310.........3320.........3330.........3340.........3350.........3360
Sequence YDGRGKPLPEYHVRIAGFDERVTVMASLRRPKRIIIRGHDEREHPFLVKGGEDLRQDQRVEQLFQVMNGI
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Known secondary structure (DSSP)

SSS


TTTS


S


SSSS


TTS
TTS
T
 .........3370.........3380.........3390.........3400.........3410.........3420.........3430
Sequence LAQDSACSQRALQLRTYSVVPMTSRLGLIEWLENTVTLKDLLLNTMSQEEKAAYLSDPRAPPCEYKDWLT
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Known secondary structure (DSSP) TTTSTT






TT

TTS
S
TTS
 .........3440.........3450.........3460.........3470.........3480.........3490.........3500
Sequence KMSGKHDVGAYMLMYKGANRTETVTSFRKRESKVPADLLKRAFVRMSTSPEAFLALRSHFASSHALICIS
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Known secondary structure (DSSP)

SSTTSS
TTS
TTTT
S
 .........3510.........3520.........3530.........3540.........3550.........3560.........3570
Sequence HWILGIGDRHLNNFMVAMETGGVIGIDFGHAFGSATQFLPVPELMPFRLTRQFINLMLPMKETGLMYSIM
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Known secondary structure (DSSP) TT




TTSTTT



TTS
SS
TTTSSSS



SS


TTTS
TTS
 .........3580.........3590.........3600.........3610.........3620.........3630.........3640
Sequence VHALRAFRSDPGLLTNTMDVFVKEPSFDWYPRQKICYAKRKLAGANPAVITCDELLLGHEKAPAFRDYVA
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Known secondary structure (DSSP) T
TTTS




TTSSB
TT
TT
 .........3650.........3660.........3670.........3680.........
Sequence VARGSKDHNIRAQEPESGLSEETQVKCLMDQATDPNILGRTWEGWEPWM
Predicted secondary structure


















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Known secondary structure (DSSP)

SSS
GGGGS
SBS

S
TSS
GGG




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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