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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c7ye2F_

Fold library idPDB HeaderMoleculeTitle
c7ye2F_3.80PDB header: transcriptionChain: F: PDB Molecule: rna polymerase sigma factor rpod;


Added to library: Sat Jan 21 13:05:52 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDTMIRGLCESALTFEAIMVWREELGTGRILLREV
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Known secondary structure (DSSP)




T



SS
SSTTBTTTB

SSSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence IDLEGTYAAIVSAMEGELREGVMAILDAIASEFEAFRKLQDKLVGSRLKGEDLSDADRKAYEGLSATIIQ
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Known secondary structure (DSSP) B


S



SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence HLKTLKLNNNRIEALVEQLYAINKRLIGLEGRLLRLADSYGISRGEFLKAYFGSELNPTWSEQVKAMGVR
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Known secondary structure (DSSP) TB
S
SSS

SSSSSS
TTTTT
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence WTKFVENDSQSVTDIRSEIAALATETGVPIDDYRRIVQTVQKGEREARQAKKEMVEANLRLVISIAKKYT
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Known secondary structure (DSSP) TTTSSSS
TTTTTTTTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVR
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Known secondary structure (DSSP) TSSS
TS

S
SS

TTTTSSS


 .........360.........370.........380.........390.........400.........410.........420
Sequence TSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAA
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Known secondary structure (DSSP) T
S


TTS
SSS

S


TT


SSSS
S
GGGT


SSS

 .........430.........440.........450.........460.........470.........480.........490
Sequence IQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSR
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Known secondary structure (DSSP) TSS

SS





TTS
SSTTSTTTTS
 .......
Sequence KLRSFLD
Predicted secondary structure

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Known secondary structure (DSSP) TTTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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