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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c7ye1C_

Fold library idPDB HeaderMoleculeTitle
c7ye1C_3.70PDB header: transcriptionChain: C: PDB Molecule: dna-directed rna polymerase subunit beta;


Added to library: Sat Jan 21 12:50:07 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QSFTGKKRIRKSFGRIPEAVQMPNLIEVQRSSYEQFLQRETRPGLRRDEGVEAVFKSVFPIKDFNERAVL
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Known secondary structure (DSSP)

SSTTTS


S




S



TT




SS


SSSSS



BTTTTB

 .........80.........90.........100.........110.........120.........130.........140
Sequence EYVSYEFEEPKYDVEECIQRDMTFAAPLKVKLRLIVFETEEETGARSVKDIKEQDVYMGDIPLMTDKGTF
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Known secondary structure (DSSP)


SS
T





S

GGG
SS
S

S





TT


 .........150.........160.........170.........180.........190.........200.........210
Sequence IVNGTERVIVSQMHRSPGVFFDHDKGKTHASGKLLFAARVIPYRGSWLDFEFDAKDIVYVRIDRRRKLPA
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Known secondary structure (DSSP)

SSS


B

SS


SS
SSSSS






SBS





TTS

TT


 .........220.........230.........240.........250.........260.........270.........280
Sequence TTFLYALGMDGEEILTTFYDVVPFEKRSGGWATPYKPERWRGVKPEFPLVDADTGEEVAPAGTKITARQA
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Known secondary structure (DSSP) SS

TTTTS





SS
SS



TTS
TT


SS



SSS



SS
SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence KKFADGGLKTLLTGRYLARDAEIYAEAGDELDVTSIQALADDVLDIDHVTVGAYMRNTLRVDKNAIREDA
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Known secondary structure (DSSP) TTTS









S



S

SSS


SS







SSS


TTT



S
 .........360.........370.........380.........390.........400.........410.........420
Sequence LFDIYRVMRPGEPPTVEAAEAMFKSLFFDAERYDLSSVGRVKMNMRLEQDVSDEVRILRKEDVLAVLKVL
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Known secondary structure (DSSP) S
SS


S
TTTSB

S

S

SS

S

 .........430.........440.........450.........460.........470.........480.........490
Sequence VGLRDGRGEIDDIDNLGNRRVRSVGELLENQYRVGLLRMERAIKERMSSVDIDTVMPHDLINAKPAAAAV
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Known secondary structure (DSSP) SS




SS
GGG
TTTS
STT

SSSSS
SSSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence REFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLI
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Known secondary structure (DSSP) S
SSB




SSSSSB

STTS

GGG
TTTTTS

TT
TTTB
TT


SSSSTTSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence NSLATHARVNKYGFIESPYRRVKDGKPQDEVVYMSAMEESKHVIAQSNIKVAEGEIVEDLVPGRINGEPT
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Known secondary structure (DSSP)
BB
SS

SSS

SSSTTGGGGS

S



SSSS
SSS

SSSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence LLQKETVDLMDVSPRQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLVQSDAPLVGTGMEAVVARDSG
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Known secondary structure (DSSP)

STT

S
STTSS
T
TTTTSB
TTB


TT



S
SST
 .........710.........720.........730.........740.........750.........760.........770
Sequence AVVIAKRTGVVEQIDGTRIVIRATEETDPARSGVDIYRMSKFQRSNQSTCINQRPLVKVGDRIVAGDIIA
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Known secondary structure (DSSP) TS
B

S



SS

S
SS

TT

S




S
TTS





SB



SS
B
 .........780.........790.........800.........810.........820.........830.........840
Sequence DGPSTELGELALGRNALVAFMPWNGYNFEDSILISERIVRDDVFTSIHIEEFEVMARDTKLGPEEITRDI
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Known secondary structure (DSSP)
TTTT

S




TTTTSSSBTTT
S





BTTB

B

SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence PNVGEEALRNLDEAGIVAIGAEVQPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGV
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Known secondary structure (DSSP) TT

SGGGTTB
TTSBB
TT
B

SS














S



SS
 .........920.........930.........940.........950.........960.........970.........980
Sequence AGTIVDVRVFNRHGVDKDERALAIERAEIDRLGKDRDDEFAILNRNISGRLKELLIGKLAQVASGLWWQI
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Known secondary structure (DSSP)


SS
SSSSSST



TT
SGGGS

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence ALEDEKAMGELESLRRLFDENRKRLDRRFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRH
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Known secondary structure (DSSP)
SS






SS




TT
B

BSS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence GNKGVISRILPIEDMPFLADGTHVDVVLNPLGVPSRMNVGQIFETHLGWACANLGKQITNLLEDWQQGGQ
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Known secondary structure (DSSP) S





B
TTTS
BBGGG
B
S
TTS
B
STT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence KQALVERLTEEELPDTEEGLVELARNLGKGVPIATPVFDGARMDDIEGHLEMAGVNKSGQSILFDGLTGE
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Known secondary structure (DSSP)






SSTTTT




SSS


TS
TTS
B
BB
TTT

 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence QFKRPVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE
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Known secondary structure (DSSP) B
SS
B
B

BS

STTT



SS

B
SSS

B

SSSSS





SS

 .........1270.........1280.........1290.........1300.........1310..
Sequence MLTVKSDDVAGRTKVYESIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELEN
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Known secondary structure (DSSP) TTTT
STTT








SS







Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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